Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1191 98.7 8e-16 >seq1191 Length=772852 Score = 98.7 bits (108), Expect = 8e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 41080 AGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGG 41139 |||| ||||||||||||||||| | ||||| ||||| || |||||||| | ||| |||| Sbjct 254504 AGTTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGG 254563 Query 41140 GACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACG 41199 |||| || || || || ||||| || |||||| | || || || | ||||| || || | Sbjct 254564 GACTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATG 254623 Query 41200 TTAC 41203 | || Sbjct 254624 TAAC 254627 Score = 98.7 bits (108), Expect = 8e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 41080 AGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGG 41139 |||| ||||||||||||||||| | ||||| ||||| || |||||||| | ||| |||| Sbjct 255756 AGTTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGG 255815 Query 41140 GACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACG 41199 |||| || || || || ||||| || |||||| | || || || | ||||| || || | Sbjct 255816 GACTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATG 255875 Query 41200 TTAC 41203 | || Sbjct 255876 TAAC 255879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 41208 TTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATA 41267 || ||||| || || ||||| ||||| |||| |||| ||| | ||| | ||||| || Sbjct 256498 TTGAAACCAGGCGACTTTGTCCACACACTAGGTGATGCTCATGTGTACCTCAATCATATT 256557 Query 41268 GAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTA 41318 |||||||||| ||||||| | | || |||| || || |||||||||||| Sbjct 256558 GAGCCGTTAAAAGAACAATTAAAGCGTGAACCAAGGCCCTTTCCAACGCTA 256608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449838438360