Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17]
1,272 sequences; 115,227,500 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1191 98.7 8e-16
>seq1191
Length=772852
Score = 98.7 bits (108), Expect = 8e-16
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 41080 AGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGG 41139
|||| ||||||||||||||||| | ||||| ||||| || |||||||| | ||| ||||
Sbjct 254504 AGTTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGG 254563
Query 41140 GACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACG 41199
|||| || || || || ||||| || |||||| | || || || | ||||| || || |
Sbjct 254564 GACTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATG 254623
Query 41200 TTAC 41203
| ||
Sbjct 254624 TAAC 254627
Score = 98.7 bits (108), Expect = 8e-16
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 41080 AGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGG 41139
|||| ||||||||||||||||| | ||||| ||||| || |||||||| | ||| ||||
Sbjct 255756 AGTTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGG 255815
Query 41140 GACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACG 41199
|||| || || || || ||||| || |||||| | || || || | ||||| || || |
Sbjct 255816 GACTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATG 255875
Query 41200 TTAC 41203
| ||
Sbjct 255876 TAAC 255879
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 41208 TTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATA 41267
|| ||||| || || ||||| ||||| |||| |||| ||| | ||| | ||||| ||
Sbjct 256498 TTGAAACCAGGCGACTTTGTCCACACACTAGGTGATGCTCATGTGTACCTCAATCATATT 256557
Query 41268 GAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTA 41318
|||||||||| ||||||| | | || |||| || || ||||||||||||
Sbjct 256558 GAGCCGTTAAAAGAACAATTAAAGCGTGAACCAAGGCCCTTTCCAACGCTA 256608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397449838438360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |