Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 3e-11 >seq2 Length=7758925 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 |||||||| || || ||||| ||||||||||| || ||||| |||||| | ||||| ||| Sbjct 5569834 AACAGTCTTCTTATTGCTCCCATGCCAACAGCATCTACCGCTCAAATCCTTGGTAACAAT 5569775 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 105624 |||| |||| || || || | ||||| || |||||| || |||||||||| Sbjct 5569774 GAATCTATTGAGCCTTATACAAGTAACATATACACGAGAAGGGTTCTGTCGGGAGAGTT 5569716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251526153280