Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq1191 89.7 4e-13 >seq1191 Length=772852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 111777 ACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCAC 111836 |||||| | || || |||||| |||| ||||| |||||||||||||| || || || Sbjct 254631 ACCAGTTACATGGGCTATCATGCATGTCAGTAGTGAATAACTAGCAATGTTGAAAGGTAC 254572 Query 111837 ACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATA 111880 ||| || |||||||| |||||||||| |||| || ||||||| Sbjct 254571 ACCAAGTCCCATATCAGCCGATCTTTGGTATAATTGGCATGATA 254528 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 111777 ACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCAC 111836 |||||| | || || |||||| |||| ||||| |||||||||||||| || || || Sbjct 255883 ACCAGTTACATGGGCTATCATGCATGTCAGTAGTGAATAACTAGCAATGTTGAAAGGTAC 255824 Query 111837 ACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATA 111880 ||| || |||||||| |||||||||| |||| || ||||||| Sbjct 255823 ACCAAGTCCCATATCAGCCGATCTTTGGTATAATTGGCATGATA 255780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391939523863336