Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1212 116 4e-21 >seq1212 Length=378467 Score = 116 bits (128), Expect = 4e-21 Identities = 161/222 (73%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| |||| |||||| ||||| | || || ||||| || || ||||| ||| Sbjct 239092 TCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTTTC 239151 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| |||||||| |||||||| ||||| ||||||||||| ||| | ||||| || Sbjct 239152 AACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAGCA 239211 Query 74892 ACAAGGCGTTGCGCGAACGGTGCATCGGAA---GTCATCCAAGTCTGAGCCCATTCAGCT 74948 | || || | || | | | || ||| | ||||| | |||||||||| || Sbjct 239212 ATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTGC- 239270 Query 74949 TTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAG 74989 ||| || | | ||||| | ||| || ||||| | |||||| Sbjct 239271 CTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAG 239312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207299265600