Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 4e-15 >seq13 Length=1792679 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 24757 AGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGG 24816 |||| ||||| | || || ||||| || || ||||| || ||| |||||||| | Sbjct 67949 AGGTCCAGGAAATCCCGCAAAAAGAGACGACCCCGTTTTACCCTCGATCCCCGTATGCTG 68008 Query 24817 TCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATG 24876 | ||||||||| ||| ||||||||| ||||||||||||||| |||| || | | Sbjct 68009 CCGCAAAGGTGTACGCATACTGGATAGTTGTGAACTACCGTGAGGCGTATGGCATGCACG 68068 Query 24877 CATGCAACGGAATTCTGTTCAACCATGA 24904 || | || || |||||||| |||||||| Sbjct 68069 CAAGTAATGGTATTCTGTTTAACCATGA 68096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301332064640