Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1158 89.7 4e-13 >seq1158 Length=770266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || ||| |||| ||||||||||| || | || Sbjct 341048 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACTATCACTCTTGAAGTTGAGGCTTCT 340989 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || || ||||| | |||||| || ||||||||||||||||| Sbjct 340988 GATTCTATTGACAACGTCAAAGCTAAGATTCAAGACAAAGAAGG 340945 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || ||| |||| ||||||||||| || | || Sbjct 341407 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACTATCACTCTTGAAGTTGAGGCTTCT 341348 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || || ||||| | |||||| || ||||||||||||||||| Sbjct 341347 GATTCTATTGACAACGTCAAAGCTAAGATTCAAGACAAAGAAGG 341304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || || | || ||||||||||| || | || Sbjct 337687 ATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTCTTGAAGTTGAGGCATCT 337628 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| ||||| | |||||| || ||||||||||||||||| Sbjct 337627 GACTCTATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGG 337584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || ||| | || ||||||||||| || | || Sbjct 338120 ATGCAAATTTTTGTCAAAACTTTGACTGGAAAGACCATCACTCTTGAAGTTGAGGCATCT 338061 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| ||||| | |||||| || || |||||||||||||| Sbjct 338060 GACTCTATTGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGG 338017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || ||| | || ||||||||||| || | || Sbjct 338563 ATGCAAATTTTTGTCAAAACTTTGACTGGAAAGACCATCACTCTTGAAGTTGAGGCATCT 338504 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| ||||| | |||||| || || |||||||||||||| Sbjct 338503 GACTCTATTGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGG 338460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || ||| | || ||||||||||| || | || Sbjct 341851 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATCACTCTTGAAGTTGAGGCATCT 341792 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| ||||| | |||||| || || |||||||||||||| Sbjct 341791 GACTCTATTGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGG 341748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | || ||||||||||| || | || Sbjct 342310 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAGACCATAACTCTTGAAGTTGAGGCATCT 342251 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| ||||| | ||||| || || |||||||||||||| Sbjct 342250 GACTCTATTGACAATGTCAAGGCTAAGATCCAAGACAAAGAAGG 342207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911484797440