Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10 113 1e-19 seq1158 105 2e-17 >seq10 Length=4880875 Score = 113 bits (124), Expect = 1e-19 Identities = 96/116 (83%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTC 210957 ||| || ||||||||||||||||| ||||| |||||||| ||||| | ||| || | || Sbjct 829571 TCTAAGCACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACTCAA-AGTTCGTC 829513 Query 210958 CATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||| || |||||||| |||||||| | | |||||| |||||||||| |||| Sbjct 829512 CATCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGTTGATCAGGAGGAATTCCT 829457 >seq1158 Length=770266 Score = 105 bits (116), Expect = 2e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||||||||||||||| |||||||| ||||| || || | ||| ||| Sbjct 340261 AGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 340320 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| |||||||| || || |||| |||| Sbjct 340321 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCT 340371 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||||||||||||||| ||||| || || | ||| ||| Sbjct 337704 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 337763 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || ||||| | |||| Sbjct 337764 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 337814 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||||||||||||||| ||||| || || | ||| ||| Sbjct 338137 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 338196 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || ||||| | |||| Sbjct 338197 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 338247 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||||||||||||||| ||||| || || | ||||||| Sbjct 341065 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCATCT 341124 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || || || | |||| Sbjct 341125 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 341175 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| |||||||| ||||| || || | ||||||| Sbjct 341424 AGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTACGTCCATCT 341483 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || || |||| |||| Sbjct 341484 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGAATTCCT 341534 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||||||||||||||| ||||| || || | ||| ||| Sbjct 338580 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCGTCT 338639 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || || || | |||| Sbjct 338640 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 338690 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||||||||||||||| |||||||| ||||| || || | ||| ||| Sbjct 339105 AGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 339164 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || || || | |||| Sbjct 339165 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 339215 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| |||||||| ||||| || || | ||||||| Sbjct 341868 AGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCATCT 341927 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || || || | |||| Sbjct 341928 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCT 341978 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| |||||||| ||||| || || | ||| ||| Sbjct 340707 AGAACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 340766 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || ||||||||||| ||||| || || || || | |||| Sbjct 340767 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 340817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159133108720280