Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1158 82.4 5e-11 >seq1158 Length=770266 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || ||||||||||| ||| | || || || || || || || ||||||| |||||| | Sbjct 340364 CCCCCAGATCAACAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTG 340305 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||||| || ||||||||||| | || || ||| | | | |||||||| Sbjct 340304 AGCGATTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTTCGTCTCAGAGGAGGA 340245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004360006176