Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1272 134 3e-26 seq10 113 1e-19 seq1158 96.9 8e-15 >seq1272 Length=14790 Score = 134 bits (148), Expect = 3e-26 Identities = 144/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 7545 TAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTT 7604 ||| || ||| |||| || || || |||| | ||||| |||||||| ||||| ||||| Sbjct 11507 TAACAGACAAATTTATAATGTCGTTGTTACTTCTCATGCATTTGTTATAATTTTTTTTTT 11566 Query 7605 TGTTATGCCGGTTAT-GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTG 7663 ||| || || |||| | ||| | ||| | ||||||||| |||||||||| | || | Sbjct 11567 TGTAATACCAATTATAGTTAGAAGATTTAG-AAATTGATTAATTCCTTTAATAGTAGGAG 11625 Query 7664 CTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCT 7723 |||||||||| |||||||| || | || ||||| ||||||||| || |||| ||||| | Sbjct 11626 CTCCTGATATAGCTTTTCCTCGGATAAATAATATGAGTTTTTGACTATTACCTCCTTCTT 11685 Query 7724 TATTTCTA 7731 | ||| || Sbjct 11686 TTTTTTTA 11693 >seq10 Length=4880875 Score = 113 bits (124), Expect = 1e-19 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || |||||||| |||||||||||||| |||| |||||||| |||||||| || Sbjct 829571 TCTAAGCACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCACTCAAAGTTCGTCC 829512 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 |||||| || ||||| ||||||||||| | || |||||| || || ||||| ||| Sbjct 829511 ATCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGTTGATCAGGAGGAATTCCT 829457 >seq1158 Length=770266 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||| ||||| |||| ||||||||| || || | || ||| Sbjct 340261 AGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 340320 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| |||||||| || || ||||| ||| Sbjct 340321 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCT 340371 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || |||||||||| ||||||||| || || | |||||| Sbjct 341065 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCATCT 341124 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 341125 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 341175 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| ||||||||| || || | |||||| Sbjct 341424 AGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTACGTCCATCT 341483 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || ||||| ||| Sbjct 341484 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGAATTCCT 341534 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || |||||||||| ||||||||| || || | || ||| Sbjct 337704 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 337763 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 337764 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 337814 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || |||||||||| ||||||||| || || | || ||| Sbjct 338137 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 338196 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 338197 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCCT 338247 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || |||||||||| ||||||||| || || | || ||| Sbjct 338580 AGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCGTCT 338639 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 338640 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 338690 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||| ||||| |||| ||||||||| || || | || ||| Sbjct 339105 AGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 339164 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 339165 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 339215 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| ||||||||| || || | |||||| Sbjct 341868 AGAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCATCT 341927 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 341928 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCT 341978 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| ||||||||| || || | || ||| Sbjct 340707 AGAACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCT 340766 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 340767 TCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCT 340817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192511764722768