Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq964 147 3e-30 seq2 95.1 2e-14 >seq964 Length=50745 Score = 147 bits (162), Expect = 3e-30 Identities = 333/492 (68%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 171497 GAAGGTTTGGTTTTAAAGGATATTAATGGTATGTACGAGCCCGGAAAACGTAGATGGCTT 171556 || ||| |||| || ||||||||||| || | || || || ||||| || |||||| Sbjct 24314 GAGGGTCTGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTT 24255 Query 171557 AAAATAAAGAGAGACTACTTGAACGAGGGTTCGATGGCGGATTCTGCAGATCTAGTAGTA 171616 ||| | |||| ||||| | | |||| |||||||||| | || ||| |||||||| Sbjct 24254 AAAGTGAAGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTA 24195 Query 171617 TTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTCTTTTTGATGGGC 171676 |||| || || ||||| | || | || |||||||||||| | || || ||||||| Sbjct 24194 CTGGGTGCTTACTATGGGACTGGCAGCAAAGGTGGAATGATGTCTGTGTTCCTGATGGGG 24135 Query 171677 TGTTATGACGATGACTCTGGTAAATGGAAAACTGTGACTAAA---TGTTCTGGACATGAT 171733 |||||| || | | ||| || || |||||| | |||||||||| Sbjct 24134 GTTTATGATGAAAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGAT 24075 Query 171734 GATAATACTTTAAGGGCTTTACAGGACCAA-TTAAAGATGATTAAAATTAATAAGAACCC 171792 ||| | || || | || | | ||| | |||| ||| ||||| | || | Sbjct 24074 GATGAGACATTGGAGAAGATAAACAAACAACTGAAAGTTGA-GAAAATAAGCAAAGATAT 24016 Query 171793 CCAAAAAATTCCAGAGTGGTTAGTAGTT-AATAAAATATATATTCCCGATTTTGTAGTAG 171851 | | | | ||| ||||||| | | || ||||||| || | || ||||| || |||| Sbjct 24015 GAAGAGAGTACCAAAGTGGTT-GAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAG 23957 Query 171852 AGGATCCTAAACAAT-CTCCTATATGGGAGATTTCAGGAGCTGAGTTCACATCATCCAAG 171910 || || ||| ||| | || | ||||| || | || ||||||||||| ||| || Sbjct 23956 CTGA-CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAG 23898 Query 171911 TCGCATACAGCAAATGGAATATCTATTAGATTTCCTAGATTCACTAGGATTAGAGACGAT 171970 || ||||| ||| | ||||| ||||| |||||||| ||| | || | ||||||| ||| Sbjct 23897 TCTCATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGAT 23838 Query 171971 AAAACATGGAAA 171982 || | |||||| Sbjct 23837 AAGAACTGGAAA 23826 >seq2 Length=7758925 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||||||||||| || ||||||| |||| |||| || |||||||| || | Sbjct 5568497 TCCAGCCAAAGAAATGCATGCTCGTAAGTTTGGCATAATTAGGTTCAGCTATATGTATGT 5568556 Query 76909 TCATCGAC--TGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGT 76966 | | ||| || ||||| || || ||||| | | |||||| |||||||| | ||| | Sbjct 5568557 TGA--GACTTTGGCTTTGGTCAATAAAAGCAGCACGATCAGCAGCCATTTTGACAATATT 5568614 Query 76967 CTTTTGAGGAATTTCCCA 76984 ||| || | |||||||| Sbjct 5568615 CTTCTGGGAGATTTCCCA 5568632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657754766080