Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq964 178 2e-39 seq2 91.5 2e-13 seq1212 87.8 3e-12 >seq964 Length=50745 Score = 178 bits (196), Expect = 2e-39 Identities = 343/494 (69%), Gaps = 13/494 (3%) Strand=Plus/Minus Query 170065 GAAGGTTTGGTTTTAAAAGATATTAATGGTATATATGAGCCAGGAAAACGTAGATGGCTT 170124 || ||| |||| || || |||||||| || | ||||| |||||||| || |||||| Sbjct 24314 GAGGGTCTGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTT 24255 Query 170125 AAAATAAAGAGAGACTACTTGAATG-AGGGTTCGATGGCGGATTCTGCAGATTTAGTAGT 170183 ||| | |||| ||||| | |||| |||| |||||||||| | || ||||||||||| Sbjct 24254 AAAGTGAAGAAGGACTATCT-AATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGT 24196 Query 170184 ATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTATTTTTGATGGG 170243 | |||| || || ||||| | || | || |||||||||||| | || || ||||||| Sbjct 24195 ACTGGGTGCTTACTATGGGACTGGCAGCAAAGGTGGAATGATGTCTGTGTTCCTGATGGG 24136 Query 170244 TTGCTACGATGACGACTCTGGTAAATGGAAGACTGTAACTAAA---TGTTCTGGACATGA 170300 || ||||| | | ||| || || |||||| | ||||||||| Sbjct 24135 GGTTTATGATGAAAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGA 24076 Query 170301 TGATAACACTTT--AAGGGTTTTGCAAGACCAATTAAAGATGATTAAAATAAGTAAGGAT 170358 |||| | || || | | | ||| || | | |||| ||| |||||||| || ||| Sbjct 24075 TGATGAGACATTGGAGAAGATAAACAA-ACAACTGAAAGTTGA-GAAAATAAGCAAAGAT 24018 Query 170359 CCCaaaaaaaTTCCAGAGTGGTTAGTAGTT-AATAAAATATATATTCCCGATTTTGTAGT 170417 || | | | ||| ||||||| | | || ||||||| || | || ||||| || || Sbjct 24017 ATGAAGAGAGTACCAAAGTGGTT-GAATTTGAATAAAAATCATGTCCCAGATTTGGTTGT 23959 Query 170418 AGAGGATCCTACACAAT-CTCCAATCTGGGAGATTTCAGGAGCTGAGTTCACATCATCGA 170476 || || || | | ||| | ||| | ||||| || | || ||||||||||| ||| Sbjct 23958 AGCTGA-CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAG 23900 Query 170477 AGTCTCATACGGCAAATGGAATATCTATTAGATTTCCTAGATTCAGTAGGATCAGAGACG 170536 |||||||||| ||| | ||||| ||||| |||||||| ||| | | | ||| ||| | Sbjct 23899 AGTCTCATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGG 23840 Query 170537 ATAAGACATGGAAA 170550 |||||| |||||| Sbjct 23839 ATAAGAACTGGAAA 23826 >seq2 Length=7758925 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||||||||||| || ||||||| |||| | || || |||||||| || | Sbjct 5568497 TCCAGCCAAAGAAATGCATGCTCGTAAGTTTGGCATAATTAGGTTCAGCTATATGTATGT 5568556 Query 75504 TCATCGAC--TGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGT 75561 | | ||| || ||||| || || ||||| | | |||||| |||||||| | ||| | Sbjct 5568557 TGA--GACTTTGGCTTTGGTCAATAAAAGCAGCACGATCAGCAGCCATTTTGACAATATT 5568614 Query 75562 CTTTTGAGGAATTTCCCA 75579 ||| || | |||||||| Sbjct 5568615 CTTCTGGGAGATTTCCCA 5568632 >seq1212 Length=378467 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 46880 TTTCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGT 46939 |||||| | ||||| ||| |||||| | |||| || |||||| || ||||| || | Sbjct 239571 TTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCAGAATGTATAT 239630 Query 46940 TTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT-CTGTA 46998 | |||||||| ||||||||||| || ||| ||||||| || || || || || | |||| Sbjct 239631 TCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGAACTTCCTGTG 239690 Query 46999 CAAAATCGTTCA 47010 | |||| |||| Sbjct 239691 C-GAATCTTTCA 239701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923064343040