Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1212 95.1 1e-14 >seq1212 Length=378467 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 23762 TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATAT 23821 |||| | | ||||| | |||||||| | ||||||| |||||| |||||||| |||| Sbjct 239571 TTTCATGAGTATCTCTAATATATGTGTTGATTAGTAGTGAATACATCTCAGAATGTATAT 239630 Query 23822 TTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATC 23876 | ||||||||||||||||| ||||| ||| |||| || || | | |||||| || Sbjct 239631 TCTCAATAGCAATCTGAAATCCATAGAAAAATCTTGCCTCTGTTATTTGAACTTC 239685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521479708340800