Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1158 93.3 3e-14 >seq1158 Length=770266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| || ||| |||||||||||||| Sbjct 337682 TTGCATTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTA 337741 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| ||| |||| || |||||||| || || ||||| | ||| |||||||| Sbjct 337742 ATCGCTCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATC 337801 Query 44224 TGAAGG 44229 || ||| Sbjct 337802 TGGAGG 337807 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| || ||| |||||||||||||| Sbjct 338115 TTGCATTCCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTA 338174 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| ||| |||| || |||||||| || || ||||| | ||| |||||||| Sbjct 338175 ATCGCTCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATC 338234 Query 44224 TGAAGG 44229 || ||| Sbjct 338235 TGGAGG 338240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 ||||| ||||| || | | |||| |||||| || |||||| ||||||||||||||| Sbjct 337328 ATTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCG 337387 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||| ||| |||| || |||||||| || |||||||| | ||| |||||||||| Sbjct 337388 CTCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGATCTG 337445 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| ||| ||| || ||||||||||| Sbjct 339083 TTGCATTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTA 339142 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| ||| |||| || |||||||| || || ||||| | ||| |||||||| Sbjct 339143 ATCGCTCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATC 339202 Query 44224 TG 44225 || Sbjct 339203 TG 339204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| || ||| |||||||||||||| Sbjct 338558 TTGCATTCCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTA 338617 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| || |||| || |||||||| || || ||||| | ||| |||||||| Sbjct 338618 ATCGCTCAGTGTACGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATC 338677 Query 44224 TG 44225 || Sbjct 338678 TG 338679 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||| ||| ||| || ||||||||||| Sbjct 340239 TTGCATTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTA 340298 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| ||| |||| || |||||||| || || ||||| | ||| || ||||| Sbjct 340299 ATCGCTCAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAGATAAGACGTTGTTGATC 340358 Query 44224 TG 44225 || Sbjct 340359 TG 340360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984819248824