Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1158 96.9 8e-15 >seq1158 Length=770266 Score = 96.9 bits (106), Expect = 8e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| || || ||||| ||||| ||| | Sbjct 337814 AGGAATCCCTCCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACG 337755 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || |||||| ||| |||||||||| || || || || | ||| | | ||||| Sbjct 337754 CACACTGAGCGATTACAACATCCAAAAAGAGTCTACTCTTCACTTGGTTCTTCGTCTCAG 337695 Query 178142 A 178142 | Sbjct 337694 A 337694 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/110 (80%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| || || ||||| ||||| ||| | Sbjct 338247 AGGAATCCCTCCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACG 338188 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 || || |||||| ||| |||||||||| || || || || |||| || Sbjct 338187 CACACTGAGCGATTACAACATCCAAAAAGAGTCTACTCTTCA-CTTGGTT 338139 Score = 96.9 bits (106), Expect = 8e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||| || || |||||||| ||||||||||| || || ||||| ||||||||| | Sbjct 341175 AGGAATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACG 341116 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || |||||| ||| |||||||||| || || || || | ||| | | ||||| Sbjct 341115 TACACTGAGCGATTACAACATCCAAAAAGAGTCTACTCTTCACTTGGTTCTTCGTCTCAG 341056 Query 178142 A 178142 | Sbjct 341055 A 341055 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||| || || |||||||| ||||||||||| || || ||||| ||||||||| | Sbjct 341978 AGGAATCCCACCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACG 341919 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || |||||| ||| |||| ||||| || || || || | ||| | | ||||| Sbjct 341918 CACACTGAGCGATTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTTCTTCGTCTCAG 341859 Query 178142 A 178142 | Sbjct 341858 A 341858 Score = 91.5 bits (100), Expect = 4e-13 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||| || || |||||||| ||||||||||| || || ||||| ||||| ||| | Sbjct 338690 AGGAATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACG 338631 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 || || |||||| ||| |||||||||| || || || || |||| || Sbjct 338630 TACACTGAGCGATTACAACATCCAAAAAGAGTCTACTCTTCA-CTTGGTT 338582 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||| || || |||||||| ||||||||||| || || ||||| ||||| ||| | Sbjct 339215 AGGAATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACG 339156 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || |||||| ||| |||| ||||| || || || || | ||| | | ||||| Sbjct 339155 CACACTGAGCGATTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTTCGTCTCAG 339096 Query 178142 A 178142 | Sbjct 339095 A 339095 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||| || || |||||||| ||||||||||| || || ||||| ||||| ||| | Sbjct 340817 AGGAATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACG 340758 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || |||||| ||| |||| ||||| || || || || | ||| | | ||||| Sbjct 340757 CACACTGAGCGATTACAACATCCAGAAAGAGTCTACTCTTCACTTAGTTCTTCGTCTCAG 340698 Query 178142 A 178142 | Sbjct 340697 A 340697 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| || || || |||||||| ||||||||||| || || ||||| ||||||||| | Sbjct 341534 AGGAATTCCACCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGATGGACG 341475 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || |||||| ||| |||| ||||| || || || || | ||| | | ||||| Sbjct 341474 TACACTGAGCGATTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTTCTTCGTCTCAG 341415 Query 178142 A 178142 | Sbjct 341414 A 341414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203711582190768