Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2986 116 4e-21 seq637 116 4e-21 seq368 116 4e-21 >seq2986 Length=361983 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||| ||||| ||||| || || || || || || |||||| |||||||||| Sbjct 208741 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208800 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||||||| || || || || || || ||| || || || ||||| || || ||||| | Sbjct 208801 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208860 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 |||||| |||||| || ||| ||||| |||| ||||| || || ||||||| | Sbjct 208861 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208920 Query 17166 CTTT 17169 | || Sbjct 208921 CCTT 208924 >seq637 Length=333953 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||| ||||| ||||| || || || || || || |||||| |||||||||| Sbjct 27916 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCT 27975 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||||||| || || || || || |||||| || || || ||||| || || ||||| | Sbjct 27976 TTAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 28035 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 |||||| |||||| || ||| ||||| |||| ||||| || | ||||||| | Sbjct 28036 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTG 28095 Query 17166 CTTT 17169 | || Sbjct 28096 CCTT 28099 >seq368 Length=471785 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||| ||||| ||||| || || || || || || |||||| |||||||||| Sbjct 208548 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208607 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||||||| || || || || || || ||| || || || ||||| || || ||||| | Sbjct 208608 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208667 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 |||||| |||||| || ||| ||||| |||| ||||| || || ||||||| | Sbjct 208668 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208727 Query 17166 CTTT 17169 | || Sbjct 208728 CCTT 208731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517325584896120