Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq637 132 5e-26 seq2986 127 2e-24 seq368 127 2e-24 >seq637 Length=333953 Score = 132 bits (146), Expect = 5e-26 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||| ||||| ||||| ||||| |||||||| || ||||| |||||||||||| Sbjct 27918 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCTTT 27977 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 |||||||| || |||||||||||||| || || || ||||| ||||| ||||| ||| Sbjct 27978 AACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 28037 Query 16346 ATTAATCGTTCCGCGTAC 16363 |||| |||||| || ||| Sbjct 28038 ATTATTCGTTCAGCATAC 28055 >seq2986 Length=361983 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||| ||||| ||||| ||||| |||||||| || ||||| |||||||||||| Sbjct 208743 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208802 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 |||||||| || ||||||||||| || || || || ||||| ||||| ||||| ||| Sbjct 208803 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208862 Query 16346 ATTAATCGTTCCGCGTAC 16363 |||| |||||| || ||| Sbjct 208863 ATTATTCGTTCAGCATAC 208880 >seq368 Length=471785 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||| ||||| ||||| ||||| |||||||| || ||||| |||||||||||| Sbjct 208550 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208609 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 |||||||| || ||||||||||| || || || || ||||| ||||| ||||| ||| Sbjct 208610 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208669 Query 16346 ATTAATCGTTCCGCGTAC 16363 |||| |||||| || ||| Sbjct 208670 ATTATTCGTTCAGCATAC 208687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511196991345880