Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq27196 80.6 5e-11 >seq27196 Length=754 Score = 80.6 bits (88), Expect = 5e-11 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 21466 GCATCCTCTAAATGGT-CGGGTGCAAAGTGCGCATATCGCATGGTCATTTTTATATCTGT 21524 || |||| ||||||| ||||| |||| | || |||| ||||||||| ||||| | Sbjct 586 GCTTCCTGAAAATGGTTCGGGT-CAAACTTGGCGTATCTCATGGTCATGGAAATATCCGC 528 Query 21525 ATGGCCGAGTACGCGCTGCAACACCAAAATATTACCGCCATTCATCATAAAGTGACTAGC 21584 || | ||||| || |||| || | || || ||||| ||||||||||||||||| || Sbjct 527 GTGTCTGAGTATCCGTTGCAGTACGATGATGTTGCCGCCTTTCATCATAAAGTGACTGGC 468 Query 21585 GAAGGTGTGACGTAAAACGTG 21605 ||| || || || || || || Sbjct 467 GAACGTATGGCGCAAGACATG 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97835672427588