Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1013 123 3e-23 seq1592 107 2e-18 seq197 107 2e-18 seq1072 91.5 2e-13 seq1038 91.5 2e-13 seq203 91.5 2e-13 >seq1013 Length=546551 Score = 123 bits (136), Expect = 3e-23 Identities = 309/462 (67%), Gaps = 13/462 (3%) Strand=Plus/Plus Query 147857 TAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATGGT 147916 |||| || |||| ||||||||| | || || | || || ||||||||||| ||| Sbjct 160100 TAGAGGGTCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGC 160159 Query 147917 TAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAG 147976 | ||| | || ||||| || | | ||| ||||| ||| |||| |||||||| | Sbjct 160160 TCAAAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGG 160219 Query 147977 TACTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATTATGGCAGTCTTTCTAATG 148035 |||| || ||||| ||||||| || |||||| ||||| || ||| | || || |||||| Sbjct 160220 TACTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATG 160278 Query 148036 GGTTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA---GGACAT 148092 ||| || |||||| || | || ||| || || ||||| | | |||||| Sbjct 160279 GGTGTGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACTAAGGTTGGAAATGGACAT 160338 Query 148093 GATGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGG 148150 |||||| | || || || || || | ||| | | ||||| ||||| | ||||| Sbjct 160339 GATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGG 160396 Query 148151 ATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTT--AATAAAATCTATATTCCCGATTTTGT 148208 || || ||| | ||| ||| | || || |||| || | || | || ||||| || Sbjct 160397 ATGTAAATAAAGTCCCAACATGGCT--TAATTTAAATAGAAACCATGTCCCAGATTTAGT 160454 Query 148209 AGTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAGAGTTTACATCTTC 148268 || | |||||||| || | | ||||| ||| | ||| | ||||| ||| || Sbjct 160455 GGTTGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGTC 160514 Query 148269 CAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAG 148310 | || || || ||| ||| || || || || ||||| || Sbjct 160515 AGACTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAG 160556 >seq1592 Length=1045015 Score = 107 bits (118), Expect = 2e-18 Identities = 316/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 147859 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATGGTTA 147918 ||||| |||| ||||||||| | || || | || || ||||||||||| ||| | Sbjct 681962 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 682021 Query 147919 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 147978 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 682022 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 682081 Query 147979 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATTATGGCAGTCTTTCTAATGGG 148037 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 682082 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 682140 Query 148038 TTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA---GGACATGA 148094 | || |||||| | | | | ||| || || ||||| | | |||||||| Sbjct 682141 TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATGA 682200 Query 148095 TGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGAT 148152 |||| | || || || || || | ||| | | ||||| ||||| | ||||||| Sbjct 682201 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 682258 Query 148153 CCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTA 148212 || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 682259 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 682318 Query 148213 GAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAG 148272 | |||||||| || | | ||||| || | ||| | ||||| ||| || | Sbjct 682319 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 682378 Query 148273 TCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGAT 148332 || || || ||| ||| || || || | ||||| || |||| | ||| || ||| Sbjct 682379 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGAC 682438 Query 148333 AA 148334 || Sbjct 682439 AA 682440 >seq197 Length=433710 Score = 107 bits (118), Expect = 2e-18 Identities = 316/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 147859 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATGGTTA 147918 ||||| |||| ||||||||| | || || | || || ||||||||||| ||| | Sbjct 60079 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 60138 Query 147919 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 147978 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 60139 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 60198 Query 147979 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATTATGGCAGTCTTTCTAATGGG 148037 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 60199 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 60257 Query 148038 TTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA---GGACATGA 148094 | || |||||| | | | | ||| || || ||||| | | |||||||| Sbjct 60258 TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATGA 60317 Query 148095 TGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGAT 148152 |||| | || || || || || | ||| | | ||||| ||||| | ||||||| Sbjct 60318 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 60375 Query 148153 CCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTA 148212 || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 60376 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 60435 Query 148213 GAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAG 148272 | |||||||| || | | ||||| || | ||| | ||||| ||| || | Sbjct 60436 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 60495 Query 148273 TCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGAT 148332 || || || ||| ||| || || || | ||||| || |||| | ||| || ||| Sbjct 60496 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGAC 60555 Query 148333 AA 148334 || Sbjct 60556 AA 60557 >seq1072 Length=3228912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 2898253 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 2898312 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 2898313 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 2898362 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 54779 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 ||||| ||||||||||| | || || || || | |||||| || || || || ||||| Sbjct 2904475 TTTTTGGTTTCTTTGTGCAAGTTAGAGACCGCAAGTCTAGCAGCGAGTATAGCGTAATCA 2904534 Query 54839 GGATGTTGTGTAGTACAAGTG-GCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 || || ||| || || ||| |||||| | || |||| || ||||| || || || || Sbjct 2904535 GGGTGAGTTGTGGT-CATGTGAGCTGCTGTCTCAGCTGCAAGTGTGTCTAACTCGACTGT 2904593 Query 54898 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTT 54942 ||| || || | ||| | ||| ||| |||||||| | ||||| Sbjct 2904594 TGTCACACCTTCATAGACTCCACTGATCACCTTCATTGTAATTTT 2904638 >seq1038 Length=472731 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 78625 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 78684 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 78685 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 78734 >seq203 Length=1902415 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 1535331 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 1535390 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 1535391 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 1535440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593469201526320