Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_001659.2 Length=170101 Score E Sequences producing significant alignments: (Bits) Value seq953 82.4 8e-11 seq231 82.4 8e-11 >seq953 Length=877227 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 49988 TTCTATCATTTGACCGTTGGTCATTCGGGAGGG-ATGTGAGTGGGGGTTTACAATGAGAT 50046 ||| |||| |||||| ||||||| || ||||| ||| | ||||||||| ||||| |||| Sbjct 656515 TTCAATCAAGTGACCGATGGTCATACGAGAGGGGATG-GCGTGGGGGTTGACAATAAGAT 656573 Query 50047 CGGGCTGCAGTCCGTCCTCTGTGAAGGGCATGTC 50080 ||||||||| ||| || |||||| ||||| || Sbjct 656574 CGGGCTGCATTCCCTCGCTTGTGAACGGCATATC 656607 >seq231 Length=852995 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 49988 TTCTATCATTTGACCGTTGGTCATTCGGGAGGG-ATGTGAGTGGGGGTTTACAATGAGAT 50046 ||| |||| |||||| ||||||| || ||||| ||| | ||||||||| ||||| |||| Sbjct 203567 TTCAATCAAGTGACCGATGGTCATACGAGAGGGGATG-GCGTGGGGGTTGACAATAAGAT 203509 Query 50047 CGGGCTGCAGTCCGTCCTCTGTGAAGGGCATGTC 50080 ||||||||| ||| || |||||| ||||| || Sbjct 203508 CGGGCTGCATTCCCTCGCTTGTGAACGGCATATC 203475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543963855818040