Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1607 84.2 2e-11 seq498 84.2 2e-11 seq200 84.2 2e-11 >seq1607 Length=2233834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| |||||||| ||||||| || || |||||||| || || | ||| Sbjct 1461331 GGAATCCCTCCGGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCGC 1461272 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | | |||||||||||||||||| ||| |||| || || Sbjct 1461271 ACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA 1461231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| |||||||| || |||| ||| || |||||||| || || | ||| Sbjct 1468536 GGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGC 1468477 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | | |||||||||||||||||| ||| |||| || || Sbjct 1468476 ACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA 1468436 >seq498 Length=2034514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| |||||||| || |||| ||| || |||||||| || || | ||| Sbjct 1866354 GGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCGC 1866413 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | | |||||||||||||||||| ||| |||| || || Sbjct 1866414 ACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA 1866454 >seq200 Length=1515198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| |||||||| || |||| ||| || |||||||| || || | ||| Sbjct 878285 GGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCGC 878226 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | | |||||||||||||||||| ||| |||| || || Sbjct 878225 ACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA 878185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515000173877840