Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq771 82.4 5e-11 >seq771 Length=730856 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || || ||||| ||||| || || || ||||| Sbjct 277860 GTGACATGGGCAATCATGTAGGTAAGTAATGAGTAGCTTGCAATATTGAATGGAACCCCC 277919 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||||||||| || | ||| || | ||||| || || | ||||| || || || Sbjct 277920 AGCCCCATATCAGCAGAGCGTTGGTACAGTTGACAAGATAGTTCTCCATTGCATACGTAG 277979 Query 97237 AACTG 97241 ||||| Sbjct 277980 AACTG 277984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346640263342130