Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1607 84.2 2e-11 >seq1607 Length=2233834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || ||||| ||||| ||||| || |||||||| |||||| | ||||| || || Sbjct 1467511 CCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTG 1467452 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||||||||| || |||||||| |||| ||| | || || || || Sbjct 1467451 AGCGACTACAACATTCAAAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGG 1467393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445576899131280