Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq15725 192 2e-44 seq27359 111 5e-20 seq15726 91.5 5e-14 >seq15725 Length=1130 Score = 192 bits (212), Expect = 2e-44 Identities = 325/471 (69%), Gaps = 0/471 (0%) Strand=Plus/Plus Query 33392 GTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATG 33451 |||||| ||| || || | || || || |||| |||| ||||| | | || | Sbjct 659 GTAGTAATTTCGTTCGGCCTGTGCTGGTGGAATATTTCCGATAGGTTCGAGGATTCGGCG 718 Query 33452 ATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCA 33511 || |||| ||||| |||||||||||| || || ||||| || | ||| | ||||| Sbjct 719 ATTGTTGAACCAGTCGACCCATTCCAATGTGGCGAGTTCCACCGCTTCGAAGCTCTTCCA 778 Query 33512 AGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGC 33571 ||| ||| |||||||| | || | ||||| || |||||||| ||||||||||| || Sbjct 779 AGGTCCGCATCGATGAATAACCTCAGCTTTGTAGAGCCCGTTGATGGTTTCGGCCAGAGC 838 Query 33572 ATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCG 33631 ||||||||||||||| || ||||| || || ||||||||||| || | || || || Sbjct 839 ATTGTCGTAGCTGTCACCAACACTGCCTACAGATGGCTCGATGCCAGCTTGGGCGAGACG 898 Query 33632 TTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCC 33691 || | | || || || ||||| |||| || |||||||| | | || Sbjct 899 TTGGGTATATTTGATCGAAACATATTGGCTTCCCCGATCACTGTGATGAATGAGGCTACC 958 Query 33692 GTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGT 33751 | | | | || || ||| || ||| ||||| | || || ||||||||||| || Sbjct 959 TTGATGGGCTGGACACCGTTCGTGCAACGCCTGTTCCAAAGCGTCGAGAACAAAGTCGGT 1018 Query 33752 GGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAA 33811 | | | ||| ||||||| |||||||| ||||| ||| | || || ||||| Sbjct 1019 GTGGGCGGTCCGGCTTGCCCGCCACCCAACAATGCGGCGAGCGTATGTATCAATGACGAA 1078 Query 33812 TGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACAC 33862 |||||||| | | |||| ||| || |||||||| |||||||| ||||| Sbjct 1079 GGCCACGTAAACGAACCCTTTCCAGGTTGAGACATAGGTAAAATCAGACAC 1129 >seq27359 Length=826 Score = 111 bits (122), Expect = 5e-20 Identities = 307/459 (67%), Gaps = 19/459 (4%) Strand=Plus/Plus Query 34188 GACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGT-CGCGATGCTG 34246 || ||||||||| |||| |||||||||||||||||||||||| ||| | | ||||| | Sbjct 43 GAAGGGGCAATCTGCAACACCTTGCAGATCGGCTCGACCCCG-TGGTCTCCACGATGTTC 101 Query 34247 ATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCG 34306 || ||||| | ||| |||||| ||||||||||||||||| || ||| | ||| Sbjct 102 GTCTATGAACGAAATCATTTCTTGAACGGGCGGTCGAGCTCCGCCACCGCAAAATATGCG 161 Query 34307 CTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCT 34366 |||| | | |||||||||| | | || |||||| | || || |||| || Sbjct 162 GACGCCTTTCGCAATATCTCGTTGGCCTGACGAAGTTCCCGGTTTTCTCGTTCCAGAGCC 221 Query 34367 TTGATGCGTTCACG--CTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGT 34424 || || ||| || | | | || | ||| | || || ||||| ||| Sbjct 222 TTCAT--CTTCTCGGCCATGTCGGTGGGAGCACCAGCACGTGTGCCGTTGTCGATCTC-- 277 Query 34425 TGC--GCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGA 34482 ||| ||||||||| || || ||||| | ||| ||||| ||| | || ||||| Sbjct 278 TGCCTTCTTAACCCATTCGTTCAATGTCTGTGCCGTACAGCCAATCTTACCGGCTATCGA 337 Query 34483 TTCGACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGC 34542 | || || | ||| ||| |||| ||||| || || |||| ||||| || Sbjct 338 TGTGATCGCAGACCATCGCGAACGGTGATCGCTTTCGTGATCAAAAACCATACGCACCGC 397 Query 34543 GCGCTCTCGGACTTCCGGGGAAAACTGCTTGGCTTCTGT-----TCATGGCTCCATTCT- 34596 || || ||||| || ||||||| || | | ||| |||| |||| || || Sbjct 398 ACGGGAACGAACTTCTGGTGAAAACTTGTTCGATGTTGTGTTTGTCAT-GCTCTATCCTA 456 Query 34597 CTC-AGAGTTGGAGCCTCC-ACAAACTCGGGGCGGTTCA 34633 ||| |||||| |||||||| |||| ||||||||||| Sbjct 457 CTCAAGAGTTAGAGCCTCCGGTAAACAAGGGGCGGTTCA 495 >seq15726 Length=1248 Score = 91.5 bits (100), Expect = 5e-14 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 33392 GTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATG 33451 |||||| ||| || || || || || || |||| |||| ||||| | | ||| | Sbjct 919 GTAGTAATTTCGTTCGGCGTCTGCTGGTGGAATATTTCCGATAGGTTCGAGGATTCGACG 860 Query 33452 ATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCA 33511 || ||| ||||| |||||||||||| || || ||||| || | ||| | ||||| Sbjct 859 ATTTTTGAACCAGTCGACCCATTCCAATGTGGCGAGTTCCACCGCTTCGAAGCTCTTCCA 800 Query 33512 AGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGC 33569 ||| ||| |||||||| | || | ||||| || |||||||| |||||||| ||| Sbjct 799 AGGTCCGCATCGATGAATAACCTCAGCTTTGTAGAGCCCGTTGATGGTTTCGGCGAGC 742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170603072939430