Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1013 111 2e-19 seq1072 95.1 2e-14 seq1038 95.1 2e-14 seq203 95.1 2e-14 seq1592 93.3 5e-14 seq197 93.3 5e-14 seq2986 89.7 6e-13 seq368 89.7 6e-13 >seq1013 Length=546551 Score = 111 bits (122), Expect = 2e-19 Identities = 305/462 (66%), Gaps = 13/462 (3%) Strand=Plus/Plus Query 155780 TAGAAGGATTGGTCTTAAAAGATATTAATGGCGTATACGAACCGGGAAAGAGAAGATGGT 155839 |||| || |||| ||||||||| | || || | || ||||||||||| || ||| Sbjct 160100 TAGAGGGTCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGC 160159 Query 155840 TAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAG 155899 | ||| | || ||||| || | | ||| ||||| ||| |||| |||||||| | Sbjct 160160 TCAAAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGG 160219 Query 155900 TACTAGGTGCCTACTATGGTAAAGGAGGAAAGGGTGGTATCATGGCAGTCTTTCTAATGG 155959 |||| || || || ||||||| || | || ||||| || ||| | || || ||||||| Sbjct 160220 TACTTGGGGCTTATTATGGTACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGG 160279 Query 155960 GTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTT----CCGGTCAC 156015 || || || ||| || | || ||| || || ||| || ||| || || Sbjct 160280 GTGTGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACAT 160338 Query 156016 GATGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGG 156073 |||||| | || || || || || | ||| | | ||||| ||||| | ||||| Sbjct 160339 GATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGG 160396 Query 156074 ATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTT--AATAAAATCTATATTCCCGATTTTGT 156131 || || ||| | ||| ||| | || || |||| || | || | || ||||| || Sbjct 160397 ATGTAAATAAAGTCCCAACATGGCT--TAATTTAAATAGAAACCATGTCCCAGATTTAGT 160454 Query 156132 AGTAGATGATCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTC 156191 || | ||||||||| || | | ||||| ||| | ||| | ||||| ||| || Sbjct 160455 GGTTGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGTC 160514 Query 156192 CAAGTCACATACAGCGAATGGAATATCAATTAGATTTCCTAG 156233 | || || || ||| ||| || ||||| || ||||| || Sbjct 160515 AGACTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAG 160556 >seq1072 Length=3228912 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || |||||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 2898253 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 2898312 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 2898313 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 2898362 >seq1038 Length=472731 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || |||||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 78625 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 78684 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 78685 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 78734 >seq203 Length=1902415 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || |||||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 1535331 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 1535390 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 1535391 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 1535440 >seq1592 Length=1045015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 312/482 (65%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 155782 GAAGGATTGGTCTTAAAAGATATTAATGGCGTATACGAACCGGGAAAGAGAAGATGGTTA 155841 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 681962 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 682021 Query 155842 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 155901 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 682022 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 682081 Query 155902 CTAGGTGCCTACTATGGTAAAGGAGGAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGT 155961 || || || || ||||||| || | || ||||| || ||| | || || ||||||||| Sbjct 682082 CTTGGGGCTTATTATGGTACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGGGT 682141 Query 155962 TGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTT----CCGGTCACGA 156017 || || ||| | | | | ||| || || ||| || ||| || || || Sbjct 682142 GTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACATGA 682200 Query 156018 TGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGAT 156075 |||| | || || || || || | ||| | | ||||| ||||| | ||||||| Sbjct 682201 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 682258 Query 156076 CCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTA 156135 || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 682259 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 682318 Query 156136 GATGATCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAG 156195 | ||||||||| || | | ||||| || | ||| | ||||| ||| || | Sbjct 682319 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 682378 Query 156196 TCACATACAGCGAATGGAATATCAATTAGATTTCCTAGATTTACTAGGATTAGAGAAGAT 156255 || || || ||| ||| || ||||| | ||||| || |||| | ||| || ||| Sbjct 682379 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGAC 682438 Query 156256 AA 156257 || Sbjct 682439 AA 682440 >seq197 Length=433710 Score = 93.3 bits (102), Expect = 5e-14 Identities = 312/482 (65%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 155782 GAAGGATTGGTCTTAAAAGATATTAATGGCGTATACGAACCGGGAAAGAGAAGATGGTTA 155841 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 60079 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 60138 Query 155842 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 155901 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 60139 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 60198 Query 155902 CTAGGTGCCTACTATGGTAAAGGAGGAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGT 155961 || || || || ||||||| || | || ||||| || ||| | || || ||||||||| Sbjct 60199 CTTGGGGCTTATTATGGTACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGGGT 60258 Query 155962 TGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTT----CCGGTCACGA 156017 || || ||| | | | | ||| || || ||| || ||| || || || Sbjct 60259 GTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACATGA 60317 Query 156018 TGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGAT 156075 |||| | || || || || || | ||| | | ||||| ||||| | ||||||| Sbjct 60318 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 60375 Query 156076 CCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTA 156135 || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 60376 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 60435 Query 156136 GATGATCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAG 156195 | ||||||||| || | | ||||| || | ||| | ||||| ||| || | Sbjct 60436 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 60495 Query 156196 TCACATACAGCGAATGGAATATCAATTAGATTTCCTAGATTTACTAGGATTAGAGAAGAT 156255 || || || ||| ||| || ||||| | ||||| || |||| | ||| || ||| Sbjct 60496 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGAC 60555 Query 156256 AA 156257 || Sbjct 60556 AA 60557 >seq2986 Length=361983 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 33229 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT---TGAGACATAACTC 33285 |||| |||||||||| |||||| | || | | |||||| | | |||||| | Sbjct 208067 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 208126 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 | |||||||||||| |||||||| ||||| || || || || || ||||||| ||| | Sbjct 208127 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 208186 Query 33346 TATTTTCCATGAAATCAAACGGATT 33370 | |||||||| ||||||||||| Sbjct 208187 TGAGCTCCATGAAGTCAAACGGATT 208211 >seq368 Length=471785 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 33229 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT---TGAGACATAACTC 33285 |||| |||||||||| |||||| | || | | |||||| | | |||||| | Sbjct 207874 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 207933 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 | |||||||||||| |||||||| ||||| || || || || || ||||||| ||| | Sbjct 207934 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 207993 Query 33346 TATTTTCCATGAAATCAAACGGATT 33370 | |||||||| ||||||||||| Sbjct 207994 TGAGCTCCATGAAGTCAAACGGATT 208018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629549856665520