Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2986 129 5e-25 seq368 129 5e-25 seq637 120 3e-22 seq1072 114 1e-20 seq1038 114 1e-20 seq203 114 1e-20 >seq2986 Length=361983 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||| || || ||||| || |||||||| |||||||| ||| Sbjct 208743 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208802 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||||||||||||| || || || |||||||||| |||||||| Sbjct 208803 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208862 Query 11774 ACTACTCTTTCTCCATATA------CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCA 11827 | || || ||| |||| | |||||| || |||||||| || ||||| || Sbjct 208863 ATTATTCGTTCAGCATACAGTGCGTCCTTGT--CT-GATATCCACTTGAGCGCCCACTCT 208919 Query 11828 GCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAAT 11873 || ||||| || ||| || ||||| || || || ||| |||| Sbjct 208920 GCCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGAAAT 208967 >seq368 Length=471785 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||| || || ||||| || |||||||| |||||||| ||| Sbjct 208550 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208609 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||||||||||||| || || || |||||||||| |||||||| Sbjct 208610 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208669 Query 11774 ACTACTCTTTCTCCATATA------CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCA 11827 | || || ||| |||| | |||||| || |||||||| || ||||| || Sbjct 208670 ATTATTCGTTCAGCATACAGTGCGTCCTTGT--CT-GATATCCACTTGAGCGCCCACTCT 208726 Query 11828 GCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAAT 11873 || ||||| || ||| || ||||| || || || ||| |||| Sbjct 208727 GCCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGAAAT 208774 >seq637 Length=333953 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||| || || ||||| || ||||||| |||||||| ||| Sbjct 27918 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCTTT 27977 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||||||||| ||| || || || |||||||||| |||||||| Sbjct 27978 AACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 28037 Query 11774 ACTACTCTTTCTCCATATA------CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCA 11827 | || || ||| |||| | |||||| || |||||||| || ||||| || Sbjct 28038 ATTATTCGTTCAGCATACAGTGCGTCCTTGT--CT-GATATCCACTTGAGAGCCCACTCT 28094 Query 11828 GCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAAT 11873 || ||||| || ||| || ||||| || || || ||| |||| Sbjct 28095 GCCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGAAAT 28142 >seq1072 Length=3228912 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || ||||||| |||||||| || |||||||| || || ||||||||||| Sbjct 2898253 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 2898312 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || || ||||| | | ||||||| || |||||||| |||||||| ||||| ||||| Sbjct 2898313 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGA 2898372 Query 37258 CTATTTCTCAATCCATGT 37275 || || || | |||||| Sbjct 2898373 CTGTTCCTGATACCATGT 2898390 >seq1038 Length=472731 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || ||||||| |||||||| || |||||||| || || ||||||||||| Sbjct 78625 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 78684 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || || ||||| | | ||||||| || |||||||| |||||||| ||||| ||||| Sbjct 78685 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGA 78744 Query 37258 CTATTTCTCAATCCATGT 37275 || || || | |||||| Sbjct 78745 CTGTTCCTGATACCATGT 78762 >seq203 Length=1902415 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || ||||||| |||||||| || |||||||| || || ||||||||||| Sbjct 1535331 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 1535390 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || || ||||| | | ||||||| || |||||||| |||||||| ||||| ||||| Sbjct 1535391 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGA 1535450 Query 37258 CTATTTCTCAATCCATGT 37275 || || || | |||||| Sbjct 1535451 CTGTTCCTGATACCATGT 1535468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468325624250960