Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1013 114 2e-20 seq637 114 2e-20 seq1072 100 4e-16 seq1038 100 4e-16 seq203 100 4e-16 seq2986 98.7 1e-15 seq368 98.7 1e-15 seq1592 96.9 5e-15 seq197 96.9 5e-15 >seq1013 Length=546551 Score = 114 bits (126), Expect = 2e-20 Identities = 308/463 (67%), Gaps = 15/463 (3%) Strand=Plus/Plus Query 174219 TAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGT 174278 |||| || |||| ||||||||| | || || | || ||||||||||| || ||| Sbjct 160100 TAGAGGGTCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGC 160159 Query 174279 TAAAAATAAAGCGAGACTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGTAG 174338 | ||| | || ||||| || | | ||| ||||| ||| |||| |||||||| | Sbjct 160160 TCAAAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGG 160219 Query 174339 TACTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATG 174397 |||| || ||||| ||||||| || |||||| ||||| || ||| | || || |||||| Sbjct 160220 TACTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATG 160278 Query 174398 GGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTT----CCGGACA 174453 ||| || || ||| || | || ||| || || ||| || ||| ||||| Sbjct 160279 GGTGTGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACA 160337 Query 174454 CGATGATAATACGTT--AAGAGTTTTGCAAGACCAATTAAAGATGATTAAAATTAACAAG 174511 |||||| | || || || | || || | ||| | || ||| | ||||| | |||| Sbjct 160338 TGATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAG 160395 Query 174512 GATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTT--AATAAAATCTATATTCCCGATTTTG 174569 ||| || ||| | ||| ||| | || || |||| || | || | || ||||| | Sbjct 160396 GATGTAAATAAAGTCCCAACATGGCT--TAATTTAAATAGAAACCATGTCCCAGATTTAG 160453 Query 174570 TAGTAGAGGATCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTT 174629 | || | ||||| || || | | ||||| ||| | ||| | ||||| ||| | Sbjct 160454 TGGTTGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGT 160513 Query 174630 CCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAG 174672 | | || || || ||| ||| || || || || ||||| || Sbjct 160514 CAGACTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAG 160556 >seq637 Length=333953 Score = 114 bits (126), Expect = 2e-20 Identities = 161/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| ||||| || || | || ||||| || || || || | Sbjct 27916 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCT 27975 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| |||||||||||| || ||||| || || || | |||||| | Sbjct 27976 TTAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 28035 Query 50102 CAACAAGTCTCTCTCCATA-ACT--GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 | | | || || |||| | | | | |||| ||||||||| ||||||| || | Sbjct 28036 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTG 28095 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 ||||||| ||||| |||| ||||| |||||||| || ||| Sbjct 28096 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 28139 >seq1072 Length=3228912 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || ||||| ||||| | ||||| | ||||| |||||||| || |||||||| | Sbjct 2898253 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 2898312 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 ||||| |||||||||| ||||||||||| ||||| |||||||| || || Sbjct 2898313 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 2898362 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 79641 TACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGT 79700 |||||||| || | | | || | | ||||| ||||| ||||| || |||||| || Sbjct 2900799 TACCTCATCAGGAGCTGTGTACTCGACGATTTCCGTGCACAGGTTCGAACTCTTAATCGT 2900858 Query 79701 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGT 79760 || | |||||||||||| ||| |||||||||| || ||||| || ||| |||| || Sbjct 2900859 CCCCAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATATAGCATGTACGGTGT 2900918 Query 79761 ACCAGTTTCAATCTG 79775 || ||||| ||||| Sbjct 2900919 GCCGGTTTCGATCTG 2900933 >seq1038 Length=472731 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || ||||| ||||| | ||||| | ||||| |||||||| || |||||||| | Sbjct 78625 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 78684 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 ||||| |||||||||| ||||||||||| ||||| |||||||| || || Sbjct 78685 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 78734 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||| ||||| ||||| || |||||| || || | |||||||||||| ||| || Sbjct 80350 ATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCCAAGATTTTGTTGATTTGATTTTCTG 80409 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTG 79775 |||||||| || |||||||| ||| | || || || ||||| ||||| Sbjct 80410 TTACACGCGTCTTTATAAAGCATGTAGGGTGTGCCGGTTTCGATCTG 80456 >seq203 Length=1902415 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || ||||| ||||| | ||||| | ||||| |||||||| || |||||||| | Sbjct 1535331 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 1535390 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 ||||| |||||||||| ||||||||||| ||||| |||||||| || || Sbjct 1535391 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 1535440 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||| ||||| ||||| || |||||| || || | |||||||||||| ||| || Sbjct 1537056 ATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCCAAGATTTTGTTGATTTGATTTTCTG 1537115 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTG 79775 |||||||| || |||||||| ||| | || || || ||||| ||||| Sbjct 1537116 TTACACGCGTCTTTATAAAGCATGTAGGGTGTGCCGGTTTCGATCTG 1537162 >seq2986 Length=361983 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 49607 TGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCT---TGAGACATAACTC 49663 |||| |||||||||| ||||||| | || | |||||||| | | |||||| | Sbjct 208067 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 208126 Query 49664 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 49723 | |||||||||||| |||||||| ||||| || || || || || ||||||| ||| | Sbjct 208127 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 208186 Query 49724 TATTTTCCATGAAATCAAACGGATT 49748 | |||||||| ||||||||||| Sbjct 208187 TGAGCTCCATGAAGTCAAACGGATT 208211 >seq368 Length=471785 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 49607 TGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCT---TGAGACATAACTC 49663 |||| |||||||||| ||||||| | || | |||||||| | | |||||| | Sbjct 207874 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 207933 Query 49664 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 49723 | |||||||||||| |||||||| ||||| || || || || || ||||||| ||| | Sbjct 207934 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 207993 Query 49724 TATTTTCCATGAAATCAAACGGATT 49748 | |||||||| ||||||||||| Sbjct 207994 TGAGCTCCATGAAGTCAAACGGATT 208018 >seq1592 Length=1045015 Score = 96.9 bits (106), Expect = 5e-15 Identities = 315/483 (65%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 174221 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 174280 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 681962 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 682021 Query 174281 AAAATAAAGCGAGACTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGTAGTA 174340 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 682022 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 682081 Query 174341 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGG 174399 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 682082 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 682140 Query 174400 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTT----CCGGACACG 174455 | || || ||| | | | | ||| || || ||| || ||| ||||| | Sbjct 682141 TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACATG 682199 Query 174456 ATGATAATACGTT--AAGAGTTTTGCAAGACCAATTAAAGATGATTAAAATTAACAAGGA 174513 ||||| | || || || | || || | ||| | || ||| | ||||| | |||||| Sbjct 682200 ATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGA 682257 Query 174514 TCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGT 174573 | || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 682258 TGTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGT 682317 Query 174574 AGAGGATCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAA 174633 | ||||| || || | | ||||| || | ||| | ||||| ||| || | Sbjct 682318 GGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGA 682377 Query 174634 GTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGA 174693 || || || ||| ||| || || || | ||||| || |||| | ||| || ||| Sbjct 682378 CTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGA 682437 Query 174694 TAA 174696 || Sbjct 682438 CAA 682440 >seq197 Length=433710 Score = 96.9 bits (106), Expect = 5e-15 Identities = 315/483 (65%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 174221 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 174280 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 60079 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 60138 Query 174281 AAAATAAAGCGAGACTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGTAGTA 174340 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 60139 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 60198 Query 174341 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGG 174399 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 60199 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 60257 Query 174400 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTT----CCGGACACG 174455 | || || ||| | | | | ||| || || ||| || ||| ||||| | Sbjct 60258 TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACATG 60316 Query 174456 ATGATAATACGTT--AAGAGTTTTGCAAGACCAATTAAAGATGATTAAAATTAACAAGGA 174513 ||||| | || || || | || || | ||| | || ||| | ||||| | |||||| Sbjct 60317 ATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGA 60374 Query 174514 TCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGT 174573 | || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 60375 TGTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGT 60434 Query 174574 AGAGGATCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAA 174633 | ||||| || || | | ||||| || | ||| | ||||| ||| || | Sbjct 60435 GGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGA 60494 Query 174634 GTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGA 174693 || || || ||| ||| || || || | ||||| || |||| | ||| || ||| Sbjct 60495 CTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGA 60554 Query 174694 TAA 174696 || Sbjct 60555 CAA 60557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717963454954760