Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq637 127 2e-24 seq2986 123 2e-23 seq368 123 2e-23 >seq637 Length=333953 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || ||||| || || || ||||| || ||||||| |||||||| | Sbjct 27916 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCT 27975 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| || || |||||||||||||| || || || ||||| || | ||||| | Sbjct 27976 TTAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 28035 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 | |||| |||||| || || ||| | |||| |||||||| || |||||| || Sbjct 28036 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTC 28093 >seq2986 Length=361983 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || ||||| || || || ||||| || |||||||| |||||||| | Sbjct 208741 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208800 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| || || ||||||||||| || || || || ||||| || | ||||| | Sbjct 208801 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208860 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 | |||| |||||| || || ||| | |||| |||||||| || Sbjct 208861 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTT 208906 >seq368 Length=471785 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || ||||| || || || ||||| || |||||||| |||||||| | Sbjct 208548 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208607 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| || || ||||||||||| || || || || ||||| || | ||||| | Sbjct 208608 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208667 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 | |||| |||||| || || ||| | |||| |||||||| || Sbjct 208668 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTT 208713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479524061630600