Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2986 127 2e-24 seq637 127 2e-24 seq368 127 2e-24 >seq2986 Length=361983 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || ||||| || || || ||||| || |||||||| |||||||| | Sbjct 208741 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208800 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||| || || ||||| ||||| || || || || ||||| || | ||||| | Sbjct 208801 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208860 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | |||| |||||| || || ||| | |||| ||||||||| || ||||| || | Sbjct 208861 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208920 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 || || | | | || |||||||| |||||||| Sbjct 208921 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAA 208960 >seq637 Length=333953 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || ||||| || || || ||||| || ||||||| |||||||| | Sbjct 27916 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCT 27975 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||| || || ||||| ||||| || || || || ||||| || | ||||| | Sbjct 27976 TTAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 28035 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | |||| |||||| || || ||| | |||| ||||||||| || |||||| || | Sbjct 28036 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTG 28095 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 || || | | | || |||||||| |||||||| Sbjct 28096 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAA 28135 >seq368 Length=471785 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || ||||| || || || ||||| || |||||||| |||||||| | Sbjct 208548 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208607 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||| || || ||||| ||||| || || || || ||||| || | ||||| | Sbjct 208608 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208667 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | |||| |||||| || || ||| | |||| ||||||||| || ||||| || | Sbjct 208668 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208727 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 || || | | | || |||||||| |||||||| Sbjct 208728 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAA 208767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478385345918760