Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1013 109 7e-19 seq1072 105 9e-18 seq1038 105 9e-18 seq637 105 9e-18 seq203 105 9e-18 seq2986 96.9 5e-15 seq368 96.9 5e-15 seq1592 95.1 2e-14 seq197 95.1 2e-14 >seq1013 Length=546551 Score = 109 bits (120), Expect = 7e-19 Identities = 307/463 (66%), Gaps = 15/463 (3%) Strand=Plus/Plus Query 165568 TAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGT 165627 |||| || |||| ||||||||| | || || | || ||||||||||| || ||| Sbjct 160100 TAGAGGGTCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGC 160159 Query 165628 TAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAG 165687 | ||| | || ||||| || | | ||| ||||| ||| |||| |||||||| | Sbjct 160160 TCAAAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGG 160219 Query 165688 TACTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATG 165746 |||| || ||||| ||||||| || |||||| ||||| || ||| | || || |||||| Sbjct 160220 TACTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATG 160278 Query 165747 GGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTT----CCGGCCA 165802 ||| || || ||| || | || ||| || || ||| || ||| || || Sbjct 160279 GGTGTGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACA 160337 Query 165803 CGATGATAATACGTT--AAGGGTTTTACAAGACCAATTAAAGATGGTTAAAATTAACAAG 165860 |||||| | || || || || ||| | ||| | || ||||| ||||| | |||| Sbjct 160338 TGATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAG 160395 Query 165861 GATCCCaaaaaaaTTCCAGTGTGGTTGGTAGTT--AATAAAATCTATATTCCCGATTTTG 165918 ||| || ||| | ||| ||| | || || |||| || | || | || ||||| | Sbjct 160396 GATGTAAATAAAGTCCCAACATGGCT--TAATTTAAATAGAAACCATGTCCCAGATTTAG 160453 Query 165919 TAGTAGAGGATCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACGTCTT 165978 | || | ||||| || || | | ||||| ||| | ||| | ||||| || | Sbjct 160454 TGGTTGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGT 160513 Query 165979 CAAAGTCACATACAGCAAATGGAATATCGATTAGATTTCCTAG 166021 || | || || || || ||| || || || || ||||| || Sbjct 160514 CAGACTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAG 160556 >seq1072 Length=3228912 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | | Sbjct 2898253 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 2898312 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || || |||||||||| ||||||||||| |||||||| ||||| || || | | ||| Sbjct 2898313 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGA 2898372 Query 71263 CTATTTCTAAGACCATGT 71280 || || || | ||||||| Sbjct 2898373 CTGTTCCTGATACCATGT 2898390 >seq1038 Length=472731 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | | Sbjct 78625 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 78684 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || || |||||||||| ||||||||||| |||||||| ||||| || || | | ||| Sbjct 78685 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGA 78744 Query 71263 CTATTTCTAAGACCATGT 71280 || || || | ||||||| Sbjct 78745 CTGTTCCTGATACCATGT 78762 >seq637 Length=333953 Score = 105 bits (116), Expect = 9e-18 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| ||||| || || | || ||||| || || || || | Sbjct 27916 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCT 27975 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | |||||||| ||| || ||||| || || || | ||||| | Sbjct 27976 TTAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 28035 Query 42207 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | || | || || |||| || | |||| ||||||||| ||||||| || | Sbjct 28036 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTG 28095 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 ||||||| ||||| |||| ||||| |||||||| || ||| Sbjct 28096 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 28139 >seq203 Length=1902415 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | | Sbjct 1535331 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 1535390 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || || |||||||||| ||||||||||| |||||||| ||||| || || | | ||| Sbjct 1535391 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGA 1535450 Query 71263 CTATTTCTAAGACCATGT 71280 || || || | ||||||| Sbjct 1535451 CTGTTCCTGATACCATGT 1535468 >seq2986 Length=361983 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| ||||| || || | || ||||| | || || || | Sbjct 208741 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208800 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | |||||||| ||| || ||||| || || || | ||||| | Sbjct 208801 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208860 Query 42207 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | || | || || |||| || | |||| ||||||||| | ||||| || | Sbjct 208861 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208920 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 ||||||| ||||| |||| ||||| |||||||| || ||| Sbjct 208921 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 208964 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 41712 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT---TGAGACATAACTC 41768 |||| |||||||||| |||||| | || | | |||||| | | |||||| | Sbjct 208067 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 208126 Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828 | |||||||||||| |||||||| ||||| || || || ||||| ||||||| ||| | Sbjct 208127 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 208186 Query 41829 TATTTTCCATGAAATCAAACGGATT 41853 | |||||||| ||||||||||| Sbjct 208187 TGAGCTCCATGAAGTCAAACGGATT 208211 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 || || || || ||||| || || ||||| || ||||| ||||| | ||||||||||||| Sbjct 209695 ACCTCCTCAACTGTCCAGAAAGAAGCTTCAGCTTTTTTGTACATCTGCCAGATATCATGA 209754 Query 42623 TATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 |||||||| ||||| || ||||| | ||||||| Sbjct 209755 TATTGAATGGGGAAGATGACAAAACGCCTTGGATT 209789 >seq368 Length=471785 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| ||||| || || | || ||||| | || || || | Sbjct 208548 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208607 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | |||||||| ||| || ||||| || || || | ||||| | Sbjct 208608 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208667 Query 42207 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | || | || || |||| || | |||| ||||||||| | ||||| || | Sbjct 208668 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208727 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 ||||||| ||||| |||| ||||| |||||||| || ||| Sbjct 208728 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 208771 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 41712 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT---TGAGACATAACTC 41768 |||| |||||||||| |||||| | || | | |||||| | | |||||| | Sbjct 207874 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 207933 Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828 | |||||||||||| |||||||| ||||| || || || ||||| ||||||| ||| | Sbjct 207934 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 207993 Query 41829 TATTTTCCATGAAATCAAACGGATT 41853 | |||||||| ||||||||||| Sbjct 207994 TGAGCTCCATGAAGTCAAACGGATT 208018 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 || || || || ||||| || || ||||| || ||||| ||||| | ||||||||||||| Sbjct 209502 ACCTCCTCAACTGTCCAGAAAGAAGCTTCAGCTTTTTTGTACATCTGCCAGATATCATGA 209561 Query 42623 TATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 |||||||| ||||| || ||||| | ||||||| Sbjct 209562 TATTGAATGGGGAAGATGACAAAACGCCTTGGATT 209596 >seq1592 Length=1045015 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 165570 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 165629 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 681962 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 682021 Query 165630 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 165689 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 682022 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 682081 Query 165690 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGG 165748 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 682082 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 682140 Query 165749 T 165749 | Sbjct 682141 T 682141 >seq197 Length=433710 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 165570 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 165629 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 60079 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 60138 Query 165630 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 165689 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 60139 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 60198 Query 165690 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGG 165748 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 60199 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 60257 Query 165749 T 165749 | Sbjct 60258 T 60258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670853890336840