Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2409 87.8 1e-12 seq1430 87.8 1e-12 seq38 87.8 1e-12 >seq2409 Length=1160440 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | ||||| | |||||| ||||| || || || ||||||||||| || Sbjct 33558 CCACCTCTCAACCGCAAAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCACTC 33499 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | |||||| |||||| | ||||| | ||||| || |||| Sbjct 33498 AAAGTGCGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGTTGATCAGGTGGA 33439 Query 15257 ATTCCT 15262 |||||| Sbjct 33438 ATTCCT 33433 >seq1430 Length=1223854 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | ||||| | |||||| ||||| || || || ||||||||||| || Sbjct 153185 CCACCTCTCAACCGCAAAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCACTC 153126 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | ||||| | |||||| |||||| | ||||| | || || || |||| Sbjct 153125 AAAGTTCGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGTGGA 153066 Query 15257 ATTCCT 15262 |||||| Sbjct 153065 ATTCCT 153060 >seq38 Length=948742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | ||||| | |||||| ||||| || || || ||||||||||| || Sbjct 133402 CCACCTCTCAACCGCAAAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCACTC 133343 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | |||||| |||||| | ||||| | ||||| || |||| Sbjct 133342 AAAGTGCGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGTTGATCAGGTGGA 133283 Query 15257 ATTCCT 15262 |||||| Sbjct 133282 ATTCCT 133277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362029082267469