Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2986 82.4 7e-11 seq637 82.4 7e-11 seq368 82.4 7e-11 >seq2986 Length=361983 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || || || |||| || ||||| | ||||||||| || Sbjct 208743 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208802 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || |||||||| ||||| ||||| || || || || | ||||| || Sbjct 208803 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208862 Query 13295 ATCAACCTTTCACCATAC 13312 || | | |||| ||||| Sbjct 208863 ATTATTCGTTCAGCATAC 208880 >seq637 Length=333953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || || || |||| || ||||| ||||||||||| || Sbjct 27918 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCTTT 27977 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || |||||||| || || ||||| || || || || | ||||| || Sbjct 27978 AACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 28037 Query 13295 ATCAACCTTTCACCATAC 13312 || | | |||| ||||| Sbjct 28038 ATTATTCGTTCAGCATAC 28055 >seq368 Length=471785 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || || || |||| || ||||| | ||||||||| || Sbjct 208550 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208609 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || |||||||| ||||| ||||| || || || || | ||||| || Sbjct 208610 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208669 Query 13295 ATCAACCTTTCACCATAC 13312 || | | |||| ||||| Sbjct 208670 ATTATTCGTTCAGCATAC 208687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430803764394618