Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq637 87.8 4e-12 >seq637 Length=333953 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCG-CGC-CT-TAC 269125 |||||| | || || | || |||||||| || |||||| || | | ||| || || Sbjct 28111 TGTGTGCGGAAGAAGGCAGAGTGGGCTCTCAAGTGGATATCAGACAAGGACGCACTGTAT 28052 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 | ||| | || | || |||||| |||| || || || || || ||||| ||||| Sbjct 28051 GCTGAACGAATAATCGCATTTGCCTCTGTGGAGGGGATCTTTTTCAGTGGGTCATTTGCT 27992 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || || ||||| |||||| |||| || ||||| || ||||||||||| || ||| | Sbjct 27991 GCCATTTTCTGGTTAAAGAAACGAGGGCTGATGCCTGGCTTAACTTTCTCCAATGAACTC 27932 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 27931 ATCAGTAGAGATGA 27918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150896689301372