Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1081 87.8 1e-12 seq24 87.8 1e-12 >seq1081 Length=1201366 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 3872 AAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATG 3931 ||||||||||||||| ||||||||||||| || || || || || || || ||||| || Sbjct 1138225 AAAGGTGTACATTTTGTGATGGCTGACGGGGGATTTTCAGTGGAAGGCCAGGAAAACATA 1138166 Query 3932 CAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATA 3991 || || || ||| |||| | ||| || ||||| || |||||| || | Sbjct 1138165 CAGGAGATATTAACGAAGCAATTGTTATTATGTCAGATCGTATGTGCATTAGCTATTGTG 1138106 Query 3992 CGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGT 4051 || || ||||| ||| |||| | ||| ||| ||| | ||||| || ||| | ||| Sbjct 1138105 CGCATGGGTGGAAATTTTGTTTTAAAAACTTTTGATCTTTTTACTCCATTTTCTATCGGT 1138046 Query 4052 TTAGTGTA 4059 ||| |||| Sbjct 1138045 TTAATGTA 1138038 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 3536 TTTATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTT 3595 ||| ||||| ||| ||| | ||||||||||| || ||| || ||| | | | ||| Sbjct 1138573 TTTCTCAACCGAGCTGCGATGAAAATGGCAAATATGGATTCGGCTTTGAACTGCATGTTT 1138514 Query 3596 AC---ACGATTGAATGATGGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGT 3652 || || | ||| ||| |||||| | | ||||| || ||||| ||||||||| Sbjct 1138513 ACCCAACCACGGAACTTGGGAAATAATGAACTTCTTTATTTCGCCGACGTCTGCGCTGGT 1138454 Query 3653 CCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGG 3694 || ||||||||| |||||||| ||||| ||||||||||| Sbjct 1138453 CCTGGTGGTTTCTCGGAATATATTCTATGGCGAAAGAAATGG 1138412 >seq24 Length=1115981 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 3872 AAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATG 3931 ||||||||||||||| ||||||||||||| || || || || || || || ||||| || Sbjct 1052840 AAAGGTGTACATTTTGTGATGGCTGACGGGGGATTTTCAGTGGAAGGCCAGGAAAACATA 1052781 Query 3932 CAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATA 3991 || || || ||| |||| | ||| || ||||| || |||||| || | Sbjct 1052780 CAGGAGATATTAACGAAGCAATTGTTATTATGTCAGATCGTATGTGCATTAGCTATTGTG 1052721 Query 3992 CGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGT 4051 || || ||||| ||| |||| | ||| ||| ||| | ||||| || ||| | ||| Sbjct 1052720 CGCATGGGTGGAAATTTTGTTTTAAAAACTTTTGATCTTTTTACTCCATTTTCTATCGGT 1052661 Query 4052 TTAGTGTA 4059 ||| |||| Sbjct 1052660 TTAATGTA 1052653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 3536 TTTATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTT 3595 ||| ||||| ||| ||| | ||||||||||| || ||| || ||| | | | ||| Sbjct 1053188 TTTCTCAACCGAGCTGCGATGAAAATGGCAAATATGGATTCGGCTTTGAACTGCATGTTT 1053129 Query 3596 AC---ACGATTGAATGATGGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGT 3652 || || | ||| ||| |||||| | | ||||| || ||||| ||||||||| Sbjct 1053128 ACCCAACCACGGAACTTGGGAAATAATGAACTTCTTTATTTCGCCGACGTCTGCGCTGGT 1053069 Query 3653 CCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGG 3694 || ||||||||| |||||||| ||||| ||||||||||| Sbjct 1053068 CCTGGTGGTTTCTCGGAATATATTCTATGGCGAAAGAAATGG 1053027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276438972767527