Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1607 86.0 6e-12 seq498 86.0 6e-12 seq200 86.0 6e-12 >seq1607 Length=2233834 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94760 GGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 |||| ||| | ||||| ||||||||| | || | |||||||| | ||| || || Sbjct 1461186 GGTTGTTTGCAGTTTTAGTTTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCT 1461245 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || || | ||| || ||||||| ||| | ||| || ||||||||||| ||||||| Sbjct 1461246 TTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATG 1461305 Query 94880 AATCTTTGCTGATCTGGAGGAATACCT 94906 | | ||||||||| ||||| || ||| Sbjct 1461306 AGACGTTGCTGATCCGGAGGGATTCCT 1461332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| || || || || | ||| | Sbjct 1465056 TTTGCATTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGT 1465115 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| ||| | ||| || ||||||||||| ||||||| | | |||||||| Sbjct 1465116 AGTCGCTCAACGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATAAGACGTTGCTGAT 1465175 Query 94893 CTGGAGGAATACCT 94906 | ||||| || ||| Sbjct 1465176 CGGGAGGGATTCCT 1465189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| || || ||||| | ||| | Sbjct 1467385 TTTGCATTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGT 1467444 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| ||| | ||| || ||||||||||| | ||||| | | |||||||| Sbjct 1467445 AGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCGAAGATAAGACGTTGCTGAT 1467504 Query 94893 CTGGAGGAATACCT 94906 | ||||| || ||| Sbjct 1467505 CGGGAGGGATTCCT 1467518 >seq498 Length=2034514 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 |||| ||| | ||||| ||||||||| | || | |||||||| | ||| || || Sbjct 1871707 GGTTGTTTGCAGTTTTAGTTTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCT 1871648 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || || | ||| || ||||||| ||| | ||| || ||||||||||| ||||||| Sbjct 1871647 TTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATA 1871588 Query 94880 AATCTTTGCTGATCTGGAGGAATACCT 94906 | | ||||||||| ||||| || ||| Sbjct 1871587 AGACGTTGCTGATCGGGAGGGATTCCT 1871561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| || || || || | ||| | Sbjct 1869071 TTTGCATTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGT 1869012 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| ||| | ||| || ||||||||||| ||||||| | | |||||||| Sbjct 1869011 AGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGAT 1868952 Query 94893 CTGGAGGAATACCT 94906 | ||||| || ||| Sbjct 1868951 CGGGAGGGATTCCT 1868938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| || || || || | ||| | Sbjct 1869561 TTTGCATTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGT 1869502 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| ||| | ||| || ||||||||||| ||||||| | | |||||||| Sbjct 1869501 AGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGAT 1869442 Query 94893 CTGGAGGAATACCT 94906 | ||||| || ||| Sbjct 1869441 CGGGAGGGATTCCT 1869428 >seq200 Length=1515198 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94760 GGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 |||| ||| | ||||| ||||||||| | || | |||||||| | ||| || || Sbjct 872932 GGTTGTTTGCAGTTTTAGTTTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCT 872991 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || || | ||| || ||||||| ||| | ||| || ||||||||||| ||||||| Sbjct 872992 TTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATA 873051 Query 94880 AATCTTTGCTGATCTGGAGGAATACCT 94906 | | ||||||||| ||||| || ||| Sbjct 873052 AGACGTTGCTGATCGGGAGGGATTCCT 873078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| || || || || | ||| | Sbjct 875078 TTTGCATTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGT 875137 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| ||| | ||| || ||||||||||| ||||||| | | |||||||| Sbjct 875138 AGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGAT 875197 Query 94893 CTGGAGGAATACCT 94906 | ||||| || ||| Sbjct 875198 CGGGAGGGATTCCT 875211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| || || || || | ||| | Sbjct 875568 TTTGCATTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGT 875627 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| ||| | ||| || ||||||||||| ||||||| | | |||||||| Sbjct 875628 AGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGAT 875687 Query 94893 CTGGAGGAATACCT 94906 | ||||| || ||| Sbjct 875688 CGGGAGGGATTCCT 875701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448100625807240