Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1013 114 2e-20 seq1592 98.7 1e-15 seq197 98.7 1e-15 seq2986 93.3 5e-14 seq368 93.3 5e-14 seq1072 91.5 2e-13 seq1038 91.5 2e-13 seq203 91.5 2e-13 >seq1013 Length=546551 Score = 114 bits (126), Expect = 2e-20 Identities = 307/462 (66%), Gaps = 13/462 (3%) Strand=Plus/Plus Query 157084 TAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGT 157143 |||| || |||| ||||||||| | || || | || ||||||||||| || ||| Sbjct 160100 TAGAGGGTCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGC 160159 Query 157144 TAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAG 157203 | ||| | || ||||| || | | ||| ||||| ||| |||| |||||||| | Sbjct 160160 TCAAAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGG 160219 Query 157204 TACTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATG 157262 |||| || ||||| ||||||| || |||||| ||||| || ||| | || || |||||| Sbjct 160220 TACTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATG 160278 Query 157263 GGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTTACCAAGTGTTCA---GGACAC 157319 ||| || || ||| || | || ||| || ||||| ||| | | ||||| Sbjct 160279 GGTGTGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACTAAGGTTGGAAATGGACAT 160338 Query 157320 GATGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGG 157377 |||||| | || || || || || | ||| | | ||||| ||||| | ||||| Sbjct 160339 GATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGG 160396 Query 157378 ATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTT--AATAAAATCTATATTCCCGATTTTGT 157435 || || ||| | ||| ||| | || || |||| || | || | || ||||| || Sbjct 160397 ATGTAAATAAAGTCCCAACATGGCT--TAATTTAAATAGAAACCATGTCCCAGATTTAGT 160454 Query 157436 AGTAGAGGATCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTC 157495 || | |||||||| || | | ||||| ||| | ||| | ||||| ||| || Sbjct 160455 GGTTGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGTC 160514 Query 157496 CAAGTCCCATACCGCAAATGGAATATCCATTAGATTTCCTAG 157537 | || || || || ||| || || || || ||||| || Sbjct 160515 AGACTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAG 160556 >seq1592 Length=1045015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 314/482 (65%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 157086 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 157145 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 681962 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 682021 Query 157146 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 157205 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 682022 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 682081 Query 157206 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGG 157264 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 682082 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 682140 Query 157265 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTTACCAAGTGTTCA---GGACACGA 157321 | || || ||| | | | | ||| || ||||| ||| | | ||||| || Sbjct 682141 TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATGA 682200 Query 157322 TGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGAT 157379 |||| | || || || || || | ||| | | ||||| ||||| | ||||||| Sbjct 682201 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 682258 Query 157380 CCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTA 157439 || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 682259 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 682318 Query 157440 GAGGATCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAG 157499 | |||||||| || | | ||||| || | ||| | ||||| ||| || | Sbjct 682319 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 682378 Query 157500 TCCCATACCGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATTAGAGAAGAT 157559 || || || || ||| || || || | ||||| || |||| | ||| || ||| Sbjct 682379 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGAC 682438 Query 157560 AA 157561 || Sbjct 682439 AA 682440 >seq197 Length=433710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 314/482 (65%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 157086 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 157145 ||||| |||| ||||||||| | || || | || ||||||||||| || ||| | Sbjct 60079 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 60138 Query 157146 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 157205 ||| | || ||||| || | | || ||||| ||| |||| |||||||| ||| Sbjct 60139 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 60198 Query 157206 CTAGGTGCTTACTATGGTAAAGG-AGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGG 157264 || || ||||| ||||||| || |||||| ||||| || ||| | || || |||||||| Sbjct 60199 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 60257 Query 157265 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTTACCAAGTGTTCA---GGACACGA 157321 | || || ||| | | | | ||| || ||||| ||| | | ||||| || Sbjct 60258 TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATGA 60317 Query 157322 TGATAATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGAT 157379 |||| | || || || || || | ||| | | ||||| ||||| | ||||||| Sbjct 60318 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 60375 Query 157380 CCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTA 157439 || ||| | ||| ||| | | |||| || | || | || ||||| || || Sbjct 60376 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 60435 Query 157440 GAGGATCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAG 157499 | |||||||| || | | ||||| || | ||| | ||||| ||| || | Sbjct 60436 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 60495 Query 157500 TCCCATACCGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATTAGAGAAGAT 157559 || || || || ||| || || || | ||||| || |||| | ||| || ||| Sbjct 60496 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAGAGAC 60555 Query 157560 AA 157561 || Sbjct 60556 AA 60557 >seq2986 Length=361983 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 32951 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGAGACATAACTC 33007 |||| |||||||||| |||||| | || | |||||||| | | |||||| | Sbjct 208067 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 208126 Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067 | |||||||||||| |||||||| ||||| || || || || || ||||||| ||| | Sbjct 208127 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 208186 Query 33068 TATTTTCCATGAAATCAAACGGATT 33092 | |||||||| ||||||||||| Sbjct 208187 TGAGCTCCATGAAGTCAAACGGATT 208211 >seq368 Length=471785 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 32951 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGAGACATAACTC 33007 |||| |||||||||| |||||| | || | |||||||| | | |||||| | Sbjct 207874 TGTTGTTTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACAC 207933 Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067 | |||||||||||| |||||||| ||||| || || || || || ||||||| ||| | Sbjct 207934 CGGCTTTTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGA 207993 Query 33068 TATTTTCCATGAAATCAAACGGATT 33092 | |||||||| ||||||||||| Sbjct 207994 TGAGCTCCATGAAGTCAAACGGATT 208018 >seq1072 Length=3228912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 2898253 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 2898312 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 2898313 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 2898362 >seq1038 Length=472731 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 78625 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 78684 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 78685 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 78734 >seq203 Length=1902415 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || ||||| ||||| | ||||| | ||||| |||||||| || || ||||| | Sbjct 1535331 ACCTGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATT 1535390 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 || || |||||||||| ||||||||||| |||||||| ||||| || || Sbjct 1535391 GATTCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGC 1535440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622682377358440