Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1607 93.3 4e-14 seq498 87.8 2e-12 seq200 87.8 2e-12 >seq1607 Length=2233834 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 26869 AAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA 26928 |||| || ||||||||||| ||| | ||||| | || || |||||||| ||||||| Sbjct 1462907 AAGGAATTCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCC 1462848 Query 26929 GAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTA 26988 | | | |||||||| ||||| || ||||| || ||| | || ||||||| | |||| Sbjct 1462847 GCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTA 1462788 Query 26989 GAGGAGGAA 26997 ||||||||| Sbjct 1462787 GAGGAGGAA 1462779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | || || |||||||| ||||||| | Sbjct 1466354 AGGAATTCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCG 1466295 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1466294 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1466235 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1466234 AGGAGGAA 1466227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | || || | || || ||||| || ||||||| | Sbjct 1467518 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1467459 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| |||||||||||||| || ||| | || ||||||| | ||||| Sbjct 1467458 CACATTGAGCGACTACAACATTCAAAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1467399 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1467398 AGGAGGAA 1467391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| |||||||||||||| ||| | || || | | || |||||||| ||||||| | Sbjct 1463406 AGGAATACCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAACTTGAAGATGGCCG 1463347 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1463346 CACGTTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1463287 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1463286 AGGAGGAA 1463279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | | || |||||||| ||||||| | Sbjct 1466854 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCG 1466795 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1466794 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1466735 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1466734 AGGAGGAA 1466727 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | || || | || || ||||| || ||||||| | Sbjct 1461890 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1461831 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1461830 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1461771 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1461770 AGGAGGAA 1461763 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | || || || || || ||||||| | Sbjct 1463936 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAGCAGCTTGAAGATGGCCG 1463877 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1463876 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1463817 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1463816 AGGAGGAA 1463809 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||| ||||| ||| | ||||| | | || |||||||| ||||||| | Sbjct 1464689 AGGAATCCCTCCTGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCG 1464630 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1464629 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1464570 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1464569 AGGAGGAA 1464562 >seq498 Length=2034514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | || || |||||||| ||||||| | Sbjct 1867087 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCG 1867146 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || |||| || | ||||| Sbjct 1867147 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTACTTCGTCTTAG 1867206 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1867207 AGGAGGAA 1867214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | | || |||||||| ||||||| | Sbjct 1867817 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCG 1867876 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1867877 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTCCGTCTTAG 1867936 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1867937 AGGAGGAA 1867944 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||| ||||| ||| | ||||| | || || |||||||| ||||||| | Sbjct 1868490 AGGAATTCCTCCGGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCG 1868549 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1868550 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1868609 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1868610 AGGAGGAA 1868617 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | | || ||||| || ||||||| | Sbjct 1868938 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 1868997 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1868998 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1869057 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1869058 AGGAGGAA 1869065 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | | || ||||| || ||||||| | Sbjct 1869428 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 1869487 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1869488 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1869547 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1869548 AGGAGGAA 1869555 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | || || | || || ||||| || ||||||| | Sbjct 1870089 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1870148 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1870149 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1870208 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1870209 AGGAGGAA 1870216 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | || || | | || |||||||| ||||||| | Sbjct 1870898 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAACTTGAAGATGGCCG 1870957 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 1870958 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1871017 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 1871018 AGGAGGAA 1871025 >seq200 Length=1515198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||| ||||| ||| | ||||| | || || |||||||| ||||||| | Sbjct 876149 AGGAATTCCTCCGGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCG 876090 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 876089 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 876030 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 876029 AGGAGGAA 876022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | | || |||||||| ||||||| | Sbjct 876822 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCG 876763 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 876762 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTCCGTCTTAG 876703 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 876702 AGGAGGAA 876695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | || || |||||||| ||||||| | Sbjct 877552 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCG 877493 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || |||| || | ||||| Sbjct 877492 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTACTTCGTCTTAG 877433 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 877432 AGGAGGAA 877425 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | || || | | || |||||||| ||||||| | Sbjct 873741 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAACTTGAAGATGGCCG 873682 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 873681 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 873622 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 873621 AGGAGGAA 873614 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | || || | || || ||||| || ||||||| | Sbjct 874550 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 874491 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 874490 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 874431 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 874430 AGGAGGAA 874423 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | | || ||||| || ||||||| | Sbjct 875211 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 875152 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 875151 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 875092 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 875091 AGGAGGAA 875084 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26870 AGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 26929 ||| || ||||||||||| ||| | ||||| | | || ||||| || ||||||| | Sbjct 875701 AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 875642 Query 26930 AAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | | |||||||| ||||| || ||||| || ||| | || ||||||| | ||||| Sbjct 875641 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 875582 Query 26990 AGGAGGAA 26997 |||||||| Sbjct 875581 AGGAGGAA 875574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478458914630480