Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2986 93.3 1e-13 seq368 93.3 1e-13 >seq2986 Length=361983 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 ||||| ||||| | ||||| || || ||||| ||||| |||||||| ||||| ||||| Sbjct 208211 AATCCGTTTGACTTCATGGAGCTCATCTCACTGGAAGGCAAGACCAACTTCTTTGAAAAG 208152 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 | || || |||||||||||||| |||||||||| Sbjct 208151 CGTGTGGGCGAATACCAAAAAGCCGGTGTTATGG 208118 >seq368 Length=471785 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 ||||| ||||| | ||||| || || ||||| ||||| |||||||| ||||| ||||| Sbjct 208018 AATCCGTTTGACTTCATGGAGCTCATCTCACTGGAAGGCAAGACCAACTTCTTTGAAAAG 207959 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 | || || |||||||||||||| |||||||||| Sbjct 207958 CGTGTGGGCGAATACCAAAAAGCCGGTGTTATGG 207925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302785676295038