Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1607 86.0 6e-12 seq498 82.4 7e-11 seq200 82.4 7e-11 >seq1607 Length=2233834 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| |||||||||||||| ||||||| ||||| Sbjct 1467404 ACGAAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTCAATGTGCGGCC 1467463 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || || ||||| || || ||| |||| | ||| ||||| || |||||||||||| Sbjct 1467464 ATCTTCAAGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1467518 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| || || |||||||| ||||||| ||||| Sbjct 1463822 ACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCC 1463881 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || || |||||||| || ||| |||| | ||| ||||| || |||||||||||| Sbjct 1463882 ATCTTCAAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1463936 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| || || |||||||| ||||||| ||||| Sbjct 1468423 ACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCC 1468482 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || || ||||| || || ||| |||| | ||| ||||| ||||||||||||||| Sbjct 1468483 ATCTTCAAGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1468537 >seq498 Length=2034514 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| || || |||||||| ||||||| ||||| Sbjct 1866467 ACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCC 1866408 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || || ||||| || || ||| |||| | ||| ||||| ||||||||||||||| Sbjct 1866407 ATCTTCAAGCTGTTTACCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1866353 >seq200 Length=1515198 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || ||||| || || |||||||| ||||||| ||||| Sbjct 878172 ACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCC 878231 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || || ||||| || || ||| |||| | ||| ||||| ||||||||||||||| Sbjct 878232 ATCTTCAAGCTGTTTACCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 878286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471812141458560