Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2409 87.8 2e-12 seq38 87.8 2e-12 seq1607 82.4 7e-11 >seq2409 Length=1160440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||||||||| |||||| || | || || || || |||||| | ||||||| || Sbjct 33433 AGGAATTCCACCTGATCAACAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGACG 33492 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 |||| || | |||||||| || || || || |||||||| ||| | || | || | || Sbjct 33493 CACTTTGAGTGATTACAACATCCAGAAGGAGTCCACGCTTCATCTTGTTTTGCGGTTGAG 33552 Query 25220 AGGAGG 25225 ||| || Sbjct 33553 AGGTGG 33558 >seq38 Length=948742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||||||||| |||||| || | || || || || |||||| | ||||||| || Sbjct 133277 AGGAATTCCACCTGATCAACAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGACG 133336 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 |||| || | |||||||| || || || || |||||||| ||| | || | || | || Sbjct 133337 CACTTTGAGTGATTACAACATCCAGAAGGAGTCCACGCTTCATCTTGTTTTGCGGTTGAG 133396 Query 25220 AGGAGG 25225 ||| || Sbjct 133397 AGGTGG 133402 >seq1607 Length=2233834 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || || || || || || || |||| || || || ||||| | ||||||| || Sbjct 1467518 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1467459 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| || |||| ||||| ||||||||||| ||||| || || || || || | || || Sbjct 1467458 CACATTGAGCGACTACAACATTCAAAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1467399 Query 25220 AGGAGGAA 25227 |||||||| Sbjct 1467398 AGGAGGAA 1467391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433148392179335