Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2986 87.8 2e-12 seq368 87.8 2e-12 seq637 82.4 8e-11 >seq2986 Length=361983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || || || || ||||| || || ||||| |||||||||||||| | ||| || || ||| Sbjct 209695 ACCTCCTCAACTGTCCAGAAAGAAGCTTCAGCTTTTTTGTACATCTGCCAGATATCATGA 209754 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 |||||||| || || ||||||||||| | || || || |||| Sbjct 209755 TATTGAATGGGGAAGATGACAAAACGCCTTGGATTCTCCTTTA 209797 >seq368 Length=471785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || || || || ||||| || || ||||| |||||||||||||| | ||| || || ||| Sbjct 209502 ACCTCCTCAACTGTCCAGAAAGAAGCTTCAGCTTTTTTGTACATCTGCCAGATATCATGA 209561 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 |||||||| || || ||||||||||| | || || || |||| Sbjct 209562 TATTGAATGGGGAAGATGACAAAACGCCTTGGATTCTCCTTTA 209604 >seq637 Length=333953 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||| ||||| || || | ||| ||||||||||| | ||| || || | |||| Sbjct 27936 TCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCTTTAACCAGAAAATGGCAGCA 27995 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || ||| ||||| || || ||||| | |||||||| | || ||||| ||| | Sbjct 27996 AATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGTTCAGCATAC 28055 Query 93254 TTTGCGGAATT-ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 |||| || ||| | ||||| || | |||||| || || || ||| | ||| || Sbjct 28056 AGTGCGTCCTTGTCTGAT-ATCCACTTGAGAGCCCACTCTGCCTTCTTCCGCACACATGG 28114 Query 93313 TAGTGTTTCGATAGCGTTAAATAG 93336 | |||||||| || || || || Sbjct 28115 CAAGGTTTCGATGGCATTGAAAAG 28138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556624071513160