Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq737 87.8 2e-12 seq185 87.8 2e-12 seq460 84.2 2e-11 seq1607 82.4 6e-11 >seq737 Length=1614662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||||||||||||| ||||| || ||| | ||||||||||| |||| ||||| || ||| Sbjct 6123 TAAAGATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAG 6064 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 || | |||| | ||| || |||| ||||| || || ||||| || |||| Sbjct 6063 CCTCTGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGGTA 6013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||||||||||||| ||||| || ||| | ||||||||||| |||| ||||| || ||| Sbjct 31737 TAAAGATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAG 31678 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 || | |||| | ||| || |||| ||||| || || ||||| || |||| Sbjct 31677 CCTCTGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGGTA 31627 >seq185 Length=2393798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||||||||||||| ||||| || ||| | ||||||||||| |||| ||||| || ||| Sbjct 409534 TAAAGATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAG 409475 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 || | |||| | ||| || |||| ||||| || || ||||| || |||| Sbjct 409474 CCTCTGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGGTA 409424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||||||||||||| ||||| || || | ||||||||||| |||| ||||| || ||| Sbjct 418364 TAAAGATGCAAATCTTTGTCAAGACCCTTACCGGTAAAACTATCACACTTGAGGTAGAAG 418305 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 || | |||| | ||| || |||| ||||| || || ||||| || |||| Sbjct 418304 CCTCTGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGGTA 418254 >seq460 Length=260977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||||||||||||| ||||| || || | ||||||||||| |||| ||||| || ||| Sbjct 216798 TAAAGATGCAAATCTTTGTCAAGACCCTTACCGGTAAAACTATCACACTTGAGGTAGAAG 216739 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 || | |||| | ||| || |||| ||||| || || ||||| || |||| Sbjct 216738 CCTCTGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGGTA 216688 >seq1607 Length=2233834 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || || |||||||| ||||||||||| || || || |||||| | || ||| |||| Sbjct 1467517 GGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGC 1467458 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | ||| ||||||||||||||||| ||||| Sbjct 1467457 ACATTGAGCGACTACAACATTCAAAAAGAGTCCAC 1467423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419554029171085