Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq498 96.9 3e-15 seq200 96.9 3e-15 seq2409 95.1 1e-14 seq1607 95.1 1e-14 seq38 95.1 1e-14 seq1430 86.0 5e-12 >seq498 Length=2034514 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 1868585 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 1868526 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||||||||| || || ||||||||||| ||| Sbjct 1868525 GCGAAGATGAGACGTTGCTGATCCGGAGGAATTCCT 1868490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||| ||||||||| Sbjct 1866448 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTACCA 1866389 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||| ||||| || || |||||||| || ||| Sbjct 1866388 GCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1866353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 1867182 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 1867123 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||||||||| || || || ||||| || ||| Sbjct 1867122 GCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1867087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 1867912 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 1867853 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 || |||||||||| || || || ||||| || ||| Sbjct 1867852 GCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1867817 >seq200 Length=1515198 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 876054 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 876113 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||||||||| || || ||||||||||| ||| Sbjct 876114 GCGAAGATGAGACGTTGCTGATCCGGAGGAATTCCT 876149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 877457 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 877516 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||||||||| || || || ||||| || ||| Sbjct 877517 GCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 877552 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||| ||||||||| Sbjct 878191 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTACCA 878250 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||| ||||| || || |||||||| || ||| Sbjct 878251 GCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 878286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 876727 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 876786 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 || |||||||||| || || || ||||| || ||| Sbjct 876787 GCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 876822 >seq2409 Length=1160440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| | ||| | ||| || || || || ||||||||||| |||| ||| || ||| Sbjct 33544 CAAAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCACTCAAAGTGCGTCCATC 33485 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||||||||||||||||||| |||| | | |||||| || || ||||| ||| Sbjct 33484 TTCAAGTTGTTTACCAGCGAAGATCAACCTCTGTTGATCAGGTGGAATTCCT 33433 >seq1607 Length=2233834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 1462811 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 1462870 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTT 114282 ||| |||||||||| || || || |||||||| |||| Sbjct 1462871 GCGAAGATGAGACGTTGCTGATCGGGAGGAATTCCTT 1462907 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 1466259 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 1466318 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||||||||| || || || |||||||| ||| Sbjct 1466319 GCGAAGATGAGACGTTGCTGATCGGGAGGAATTCCT 1466354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||||||||||||||| ||||||| || || ||||||||| ||||| ||| Sbjct 1467423 GTGGACTCTTTTTGAATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCA 1467482 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||| |||| ||||| || || || ||||| || ||| Sbjct 1467483 GCGAAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1467518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 1464594 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 1464653 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 || |||||||||| || || || ||||| || ||| Sbjct 1464654 GCAAAGATGAGACGTTGCTGATCAGGAGGGATTCCT 1464689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || || ||||||||||||||| ||| Sbjct 1466759 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTGTTTTCCA 1466818 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 || |||||||||| || || || ||||| || ||| Sbjct 1466819 GCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1466854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || |||| || || ||||||||| ||||||||| Sbjct 1467921 GTTGACTCTTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCTTCAAGCTGTTTACCA 1467980 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 || |||||||||| || || |||||||| || ||| Sbjct 1467981 GCAAAGATGAGACGTTGCTGATCCGGAGGGATTCCT 1468016 >seq38 Length=948742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| | ||| | ||| || || || || ||||||||||| |||| ||| || ||| Sbjct 133388 CAAAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCACTCAAAGTGCGTCCATC 133329 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||||||||||||||||||| |||| | | |||||| || || ||||| ||| Sbjct 133328 TTCAAGTTGTTTACCAGCGAAGATCAACCTCTGTTGATCAGGTGGAATTCCT 133277 >seq1430 Length=1223854 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| | ||| | || || || || || ||||||||||| |||| ||| || ||| Sbjct 153171 CAAAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCACTCAAAGTTCGTCCATC 153112 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 ||||||||||||||||||| |||| | | ||| || || || ||||| ||| Sbjct 153111 TTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGTGGAATTCCT 153060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419960260724508