Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq938 89.7 1e-12 >seq938 Length=1152182 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 298322 GATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGA 298381 |||||||| || ||||||| ||||| ||||| || |||||||| |||||| | || ||| Sbjct 264183 GATGCATCTCGAACATTCAGAAGTTTACCACGCAGGGGGAACACCCCATATTTATCCCGA 264242 Query 298382 CCGACCACGGACAGCCCTGCGATTGC--AAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 298439 || || || || || |||| | || |||| | | || ||||||||||| |||| | Sbjct 264243 CCCACAACCGAGAGACCTGATACCGCCAAAGTTTTG--GCAGAATCCCCCTCGGTCAATA 264300 Query 298440 TGAGAGTGCA 298449 |||| ||||| Sbjct 264301 TGAGGGTGCA 264310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102399430724150