Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_009990.1 Length=37313 Score E Sequences producing significant alignments: (Bits) Value seq16149 309 7e-80 seq16148 178 3e-40 seq30152 172 1e-38 >seq16149 Length=1886 Score = 309 bits (342), Expect = 7e-80 Identities = 712/1073 (66%), Gaps = 8/1073 (1%) Strand=Plus/Plus Query 18286 TCAGGTGTTGGCTCTG---TTTGCTCTGGCATATCTTCTTCAATAGCTTCGCGCTCGTCT 18342 || |||||||||||| |||| || ||| || || | || || ||||| || Sbjct 572 TCTGGTGTTGGCTCTTGATTTTGTTCCGGCGCGTCATCAGCTATTTTTTTACGCTCTGCT 631 Query 18343 TTAGAAAGTACATTAGGCGGCACAATCTTTTTAAGGCGTTCCGCAATAACATCAGCGCCG 18402 | | ||| ||||| ||||| |||||||| || | | | | | | | ||||| || Sbjct 632 TCGGTAAGAACATTCGGCGGAACAATCTTCTTCAACCTTACTGATAGTATATCAGAACCC 691 Query 18403 GGCCAATCCATATTTTGAGCAATCAAGTCAGCCATAACAGCGGCAGCAGAAGGAACAGCT 18462 ||||| ||||| ||||| || |||||||||||||| ||||| || |||| || || ||| Sbjct 692 GGCCAGTCCATGTTTTGGGCGATCAAGTCAGCCATCACAGCAGCGGCAGCGGGCACGGCT 751 Query 18463 TGAGCAAATTGAATCATGGCTTCAGCCGCTTCAATACGTTGAGTAGCGAAAGCCGGGCCA 18522 ||||| ||| ||||||| ||| || ||||| || || || || | || || |||||| Sbjct 752 TGAGCGAATGCAATCATGCTTTCTGCGGCTTCCATGCGCTGTGTCGTAAACGCGGGGCCA 811 Query 18523 GTAGTNNNNNNNNNNNNNTACTTCTGAACATTAAGATCATGGATAGTTACCCACTCGCCT 18582 || || || || ||| | |||||| ||||||||||| || || Sbjct 812 GTGGTAACAACAACATCATATTTACCGACAGATAAATCATGAATAGTTACCCATTCACCG 871 Query 18583 GACTCTTCATCAAAGATCTGTTCATTCAACTTAACAAAGTCTTCAGTTTCATCAGGGAAC 18642 |||||||||| ||| || | ||| | |||||| ||||| || |||||||| ||||| Sbjct 872 CCCTCTTCATCATAGACTTGCTGATTGAGCTTAACGAAGTCCTCTGTTTCATCTTGGAAC 931 Query 18643 TTCAAACGAACAACGCGCTCTGTGTCGTAGATATGCGGGATCATTTCAACCAATATCTTA 18702 || | || || | ||| ||||| | ||| || ||||| ||||| || Sbjct 932 TTTAGGCGGTGGACCCTCTCAGTGTCTAAAATAACGGGTATCATCTCAACAGCTAGACGG 991 Query 18703 CCAACACGGCGAATTGATTTAGTTAAATTATCAATGAAGGCAAACGAGCCGCGATCACCT 18762 || | | | | || ||||||||||| || |||| || || |||| || Sbjct 992 CCTATCTCTCTTACAGCCTTCGTTAAATTATCGTAAAACTCAAAGGAACCTACATCAGCT 1051 Query 18763 TGGCGCTGTCTTGCGATAATTGCGCGGCCTGAAGTTTCATTACCCATAGCACCAAGCGAA 18822 | ||||| | || || || || || ||||||||||| ||| |||| || Sbjct 1052 TCACGCTGGCGGGCCATGATAGCTTTTCCGCTTGTTTCATTACCGCGAGCGCCAATTGAG 1111 Query 18823 GCGTCATACATACCCATTGTTGACTTAATCTTTTCA--ACTGAGTTTTGACCTAGTGTTA 18880 || ||| |||||||||| ||||| || || || || |||| ||| | || || || | Sbjct 1112 GCATCAAACATACCCATAGTTGATTTTATTTTGTCCGTACTG--TTTAGGCCAAGCGTGA 1169 Query 18881 ACTCTGCGGCTGGTACTGCG-GCTGGCGGCTGTCTTCGTGGGCCGGGGTCGCCTTGGTAT 18939 ||||||| | | | || || | || | || || |||| ||| ||| | Sbjct 1170 TTTCTGCGGAAAGGCATAAGCGCGGGTGATTGACGGCGAGGACCGGTGTCACCTGGCCCC 1229 Query 18940 TGTGGAATATAAGTAAGCAATGAAAAGTTCTTAGTATTCGCTTGCTCCCATTCATCTTCA 18999 | | | ||||| | || |||| | ||||| || | ||| || || ||| Sbjct 1230 ATAGCATTGTAAGTCAACATACCTGAGTTGCTGGTATTAGCGTTACGCCACTCGTCCTCA 1289 Query 19000 CGACCTTCAACATTGCCTTCAGAACCGATAAACGGCGCTTTAGGTGCTAATGCTACCGTT 19059 ||||| | | | ||| || | |||||| |||||||| || | || || ||| Sbjct 1290 TAGCCTTCGATCTGTTCAGCAGTTCCAACAAACGGGGCTTTAGGAGCAAGCGCCACGGTT 1349 Query 19060 TCAGTTGCGGCACTATCCCAATAGTTAGCCATTCGTTGAGCGTCTTTGCTATGACGAATA 19119 |||||||| || |||||||||||||||||||| | || ||||||||||| |||||||| Sbjct 1350 TCAGTTGCTGCGCTATCCCAATAGTTAGCCATCCTCTGCGCGTCTTTGCTGTGACGAATT 1409 Query 19120 ATGGAGCGAAATATCTCTTTCTTCTTAATTATCAAAGACTTACCCCAAACCGGGATAACT 19179 ||| | |||| | | || || ||| | ||||| ||||| || || | || Sbjct 1410 GCGGAAAGGTATATTTTTCGCTGTTTGATTGATATGGACTTGCCCCACACTGGAACAATC 1469 Query 19180 GGAATAGTTGTGCTAGGTATTTCAACTGGCCCTTCAAGGACGTTAGCCCCGGTAATCTTA 19239 ||||| ||||||| || ||||||||||| |||||||| || ||| || | || || Sbjct 1470 GGAATTGTTGTGCATGGAATTTCAACTGGACCTTCAAGAACATTATATCCCGATATTTTG 1529 Query 19240 CGCCAGTAAGTTTTAAATGTTTTCACCTTACGAGTACGAACAATAGAAATGCCAGCTTCA 19299 ||||| |||| |||||||| || || ||||| ||||| |||||| ||| Sbjct 1530 CGCCAAATCACTTTATGGGTTTTCACTTTGCGCGTACGCACAATGCTAATGCCTTTTTCC 1589 Query 19300 AGAAGTTCATCAACAATATCTTCAAGAGCATCTAACCAGAAAGAGCGTCCATC 19352 | ||| || ||||||| | ||| | | || | ||| || ||| |||||| Sbjct 1590 AAAAGCTCGTCAACAACAGGTTCTATTTCGTCAACCCACAACGAGGATCCATC 1642 >seq16148 Length=1010 Score = 178 bits (196), Expect = 3e-40 Identities = 252/349 (72%), Gaps = 8/349 (2%) Strand=Plus/Plus Query 14462 CCCCATTCAGAAGCAAGCTCTAAGCATAGGTTATAAAT--AAGTGCTCGCTCATAACCCG 14519 |||||||| || ||| | ||| || |||||||| |||| || ||| ||| || | Sbjct 53 CCCCATTCCTCAGAAAGAATGAGGCAAAGATTATAAATCAAAGT-CT-GCTTATACCCAG 110 Query 14520 GCGGTAAGTTAATAACATCAGTCAAGCAAGCAGTTGGCAATATTTCACTTAATGGCTGAA 14579 | || | || |||| || ||||| ||| || || || || || | ||||||| Sbjct 111 GTGGGAGATTGATAATGTCCGTCAATTCAGCGGTGGGTAAAATGCCAGAAAGAGGCTGAA 170 Query 14580 CAACTTCTAAGTGAAGTGTTTCATCTTGATATGGAACTGACT--CAAACAAGATTGTGTT 14637 ||| | ||| | ||||| ||| || || | |||| ||||| ||||||||| Sbjct 171 TAACAGAAAGGTGTAACACTTCATTTTGGTAAGGCA--GACTTTCAAACTTGATTGTGTT 228 Query 14638 TAAAGGCCAACCCTTACTAACATAAAAGCGAGAAGGTCGAGAAGTGTTAGTTTTGCGACT 14697 ||||||||||||||| |||||| || || || || || || ||||| |||| ||||| Sbjct 229 TAAAGGCCAACCCTTCTGAACATAGAACCGCGAGGGGCGCGATGTGTTGTTTTTCCGACT 288 Query 14698 AATGCGCGAATAGGTTTCTACATCAATAATTTCTTGAATGTAGTCGGTATCGTAGCGATC 14757 |||||| ||||||||||| || ||||||| |||||||||| |||| || ||||| ||| Sbjct 289 AATGCGAGAATAGGTTTCAACGTCAATAACTTCTTGAATGAAGTCTGTGCCGTAGGTATC 348 Query 14758 ACGAATAAAAGCCGAAAGTATTCTTTCTGGCCTTCCTGTTTCAATGTGA 14806 |||||||| ||||||| |||| ||| || | | || ||||| ||| Sbjct 349 GCGAATAAATGCCGAAACTATTTCTTCGGGGCGTGGCGTCTCAATATGA 397 >seq30152 Length=637 Score = 172 bits (190), Expect = 1e-38 Identities = 252/354 (71%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 15936 ACAGCCGATTGAGGCAACTCAAGATCAATCATTGCTAAGGCAATAGCGTCACGGTGGAAC 15995 || ||||| || || | |||||| |||||||| || | ||||| ||||||||||||||| Sbjct 1 ACTGCCGACTGTGGAAGCTCAAGGTCAATCATAGCCAGTGCAATTGCGTCACGGTGGAAC 60 Query 15996 AAGTAGTTTTGTTCGTAAGTGGTATTCGCCGCACCTAACACAGTGATCGGAGCGTTATCA 16055 | |||||||| ||||| || | || ||| || || || || || || Sbjct 61 AGATAGTTTTGCTCGTATGTAACACCAGCATTACCATGAACCGTAATTACTGCATTGGCA 120 Query 16056 GCCGGAAGAGCTGTGACATTTTGGTAAGCGGTTAAGCTAACTGGGTCGCCGTTTTCGTTG 16115 || |||| | || ||||| |||||||| | | ||| || ||||| | ||||| Sbjct 121 GCAGGAACATTGGTAACATTCTGGTAAGCAGCAATCGAAACAGGATCGCCATCAGCGTTG 180 Query 16116 TTAATGGTAGCAGTACCATCATTCA-AGCTAGGCGAGATCTTAATTGAACCAGCGCCACC 16174 || || || || ||||| ||||| | |||| || || | | ||| | | || | Sbjct 181 TTGATTGTCGCCGTACCGTCATTGATAGCT-GGTGAAACCGGAATAGTTGCCAATCCGGC 239 Query 16175 AGCATCAGTATCAACGTCTTCAAGAACAACAAACTCCTGAAGCAAGCCAGTAGTTTCATA 16234 | ||||| ||| ||| || || |||||||||||||| |||| ||| || ||| ||| Sbjct 240 ACCATCACTATTAACATCAGCAGTGACAACAAACTCCTGTAGCATGCCGGTTGTTGTATA 299 Query 16235 GTTCTGAGGGTTAACGCCAAACACGCCACCAAAGGTAATAACATCACCAGCTTT 16288 ||||||||||||||| || | |||||| |||||||||| || ||||||||||| Sbjct 300 GTTCTGAGGGTTAACACCGTATACGCCAGCAAAGGTAATCACGTCACCAGCTTT 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119231827951950