Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2986 100 3e-16 seq1038 100 3e-16 seq368 100 3e-16 seq203 100 3e-16 seq1072 96.9 4e-15 seq637 96.9 4e-15 >seq2986 Length=361983 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 |||||||||||| ||||| | || ||||| | || || ||||| ||||||||||| Sbjct 208754 GATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTTAACCAGAAAAT 208813 Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 ||| ||||||||| ||| ||||| ||||||||| | || || || | | || || Sbjct 208814 GGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGTTC 208873 Query 126199 AGCAAAGGAGCGCGACTTTGTGTCA-AACCACTTCATCGCCCACTGCGCCTTTTTCTCGA 126257 |||| | || ||| | |||| | | | |||||| | |||||||| ||||| ||| | Sbjct 208874 AGCATA-CAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTGCCTTCTTCCGCA 208932 Query 126258 TACACGGGACGGTCTGGATCGC 126279 ||| || | ||| | ||| || Sbjct 208933 CACATGGCAAGGTTTCGATGGC 208954 >seq1038 Length=472731 Score = 100 bits (110), Expect = 3e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||| | | |||||||| | |||||||| |||| || ||||||||||| || || Sbjct 80325 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGT-CC 80383 Query 114559 CAAG-TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 114617 |||| || | ||||||||| ||| |||||||||| || || ||||||||||| || || | Sbjct 80384 CAAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGC 80443 Query 114618 CCGTCTC 114624 | || || Sbjct 80444 CGGTTTC 80450 >seq368 Length=471785 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 |||||||||||| ||||| | || ||||| | || || ||||| ||||||||||| Sbjct 208561 GATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTTAACCAGAAAAT 208620 Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 ||| ||||||||| ||| ||||| ||||||||| | || || || | | || || Sbjct 208621 GGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGTTC 208680 Query 126199 AGCAAAGGAGCGCGACTTTGTGTCA-AACCACTTCATCGCCCACTGCGCCTTTTTCTCGA 126257 |||| | || ||| | |||| | | | |||||| | |||||||| ||||| ||| | Sbjct 208681 AGCATA-CAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTGCCTTCTTCCGCA 208739 Query 126258 TACACGGGACGGTCTGGATCGC 126279 ||| || | ||| | ||| || Sbjct 208740 CACATGGCAAGGTTTCGATGGC 208761 >seq203 Length=1902415 Score = 100 bits (110), Expect = 3e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||| | | |||||||| | |||||||| |||| || ||||||||||| || || Sbjct 1537031 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGT-CC 1537089 Query 114559 CAAG-TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 114617 |||| || | ||||||||| ||| |||||||||| || || ||||||||||| || || | Sbjct 1537090 CAAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGC 1537149 Query 114618 CCGTCTC 114624 | || || Sbjct 1537150 CGGTTTC 1537156 >seq1072 Length=3228912 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||| | | |||||||| | |||||||| |||| || ||||||||||| || || Sbjct 2900802 CTCATCAGGAGCTGTGTACTCGACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 2900861 Query 114559 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 114618 || || | ||||||||| ||| |||||||||| || || || |||||||| || || || Sbjct 2900862 CAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATATAGCATGTACGGTGTGCC 2900921 Query 114619 CGTCTC 114624 || || Sbjct 2900922 GGTTTC 2900927 >seq637 Length=333953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 |||||||||||| ||||| | || ||||| || || || ||||| ||||||||||| Sbjct 27929 GATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCTTTAACCAGAAAAT 27988 Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 ||| |||||| || ||| ||||| ||||||||| | || || || | | || || Sbjct 27989 GGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGTTC 28048 Query 126199 AGCAAAGGAGCGCGACTTTGTGTCA-AACCACTTCATCGCCCACTGCGCCTTTTTCTCGA 126257 |||| | || ||| | |||| | | | |||||| | ||||||| ||||| ||| | Sbjct 28049 AGCATA-CAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTGCCTTCTTCCGCA 28107 Query 126258 TACACGGGACGGTCTGGATCGC 126279 ||| || | ||| | ||| || Sbjct 28108 CACATGGCAAGGTTTCGATGGC 28129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597099657517720