Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1607 95.1 1e-14 seq498 86.0 6e-12 seq200 86.0 6e-12 >seq1607 Length=2233834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||||||||| ||||| |||| || ||||| ||| || Sbjct 1467411 ACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTCAATGTGCGGCCATCTTCA 1467470 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||||||||||||||| |||| | || |||||||||||||| || || Sbjct 1467471 AGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCC 1467517 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||| || || ||||| |||| || ||||| ||| || Sbjct 1461783 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCA 1461842 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||||||||||||||| |||| | || |||||||||||||| || || Sbjct 1461843 AGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCC 1461889 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||| || || ||||| |||| || |||||| ||| || Sbjct 1463299 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCA 1463358 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 || ||||||||||| |||| | || ||||||||||||||||| || Sbjct 1463359 AGTTGTTTTCCAGCAAAGATAAGACGTTGCTGATCGGGAGGTATTCC 1463405 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||| || || ||||| |||| || |||||| ||| || Sbjct 1465082 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCA 1465141 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 |||||||||||||| |||| | || |||||||||||||| || || Sbjct 1465142 AGCTGTTTTCCAGCAAAGATAAGACGTTGCTGATCGGGAGGGATTCC 1465188 >seq498 Length=2034514 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||| || || ||||| |||| || ||||| ||| || Sbjct 1870196 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCA 1870137 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||||||||||||||| |||| | || |||||||||||||| || || Sbjct 1870136 AGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCC 1870090 >seq200 Length=1515198 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||| || || ||||| |||| || ||||| ||| || Sbjct 874443 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCA 874502 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||||||||||||||| |||| | || |||||||||||||| || || Sbjct 874503 AGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCC 874549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475298658666160