Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2986 109 7e-19 seq637 109 7e-19 seq368 109 7e-19 seq1072 95.1 1e-14 seq1038 95.1 1e-14 seq203 95.1 1e-14 >seq2986 Length=361983 Score = 109 bits (120), Expect = 7e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 |||||||||||| ||||| | || ||||| | || || ||||| ||||||||||| Sbjct 208754 GATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTTAACCAGAAAAT 208813 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| |||||| ||| ||| ||||||||||||||| | || || || | || || || Sbjct 208814 GGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGTTC 208873 Query 127672 GGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCCACTGTGCCTTTTTCTCGA 127730 ||| | || | | | |||| | | | |||||| | |||||||| |||||| ||| | Sbjct 208874 AGCATA-CAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTGCCTTCTTCCGCA 208932 Query 127731 TACATGGGACGGTCTGGATCGC 127752 |||||| | ||| | ||| || Sbjct 208933 CACATGGCAAGGTTTCGATGGC 208954 >seq637 Length=333953 Score = 109 bits (120), Expect = 7e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 |||||||||||| ||||| | || ||||| || || || ||||| ||||||||||| Sbjct 27929 GATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCTTTAACCAGAAAAT 27988 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| |||||| ||| ||| ||||||||||||||| | || || || | || || || Sbjct 27989 GGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGTTC 28048 Query 127672 GGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCCACTGTGCCTTTTTCTCGA 127730 ||| | || | | | |||| | | | |||||| | ||||||| |||||| ||| | Sbjct 28049 AGCATA-CAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTGCCTTCTTCCGCA 28107 Query 127731 TACATGGGACGGTCTGGATCGC 127752 |||||| | ||| | ||| || Sbjct 28108 CACATGGCAAGGTTTCGATGGC 28129 >seq368 Length=471785 Score = 109 bits (120), Expect = 7e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 |||||||||||| ||||| | || ||||| | || || ||||| ||||||||||| Sbjct 208561 GATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTTAACCAGAAAAT 208620 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| |||||| ||| ||| ||||||||||||||| | || || || | || || || Sbjct 208621 GGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGTTC 208680 Query 127672 GGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCCACTGTGCCTTTTTCTCGA 127730 ||| | || | | | |||| | | | |||||| | |||||||| |||||| ||| | Sbjct 208681 AGCATA-CAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTGCCTTCTTCCGCA 208739 Query 127731 TACATGGGACGGTCTGGATCGC 127752 |||||| | ||| | ||| || Sbjct 208740 CACATGGCAAGGTTTCGATGGC 208761 >seq1072 Length=3228912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||| | | |||||||| | |||||||| |||| || ||||||||||| || || Sbjct 2900802 CTCATCAGGAGCTGTGTACTCGACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 2900861 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 || || | ||||||||| ||| |||||||||| || || || ||||| || || || || Sbjct 2900862 CAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATATAGCATGTACGGTGTGCC 2900921 Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 || || | || | || || | ||| | ||||| Sbjct 2900922 GGTTTCGATCTGTGCCTCGATCACAGCGTACCATA 2900956 >seq1038 Length=472731 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||| | | |||||||| | |||||||| |||| || ||||||||||| || || Sbjct 80325 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGT-CC 80383 Query 116520 CAAG-TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578 |||| || | ||||||||| ||| |||||||||| || || || ||||| || || || | Sbjct 80384 CAAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGC 80443 Query 116579 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 | || || | || | || || | ||| | ||||| Sbjct 80444 CGGTTTCGATCTGTGCCTCGATCACAGCGTACCATA 80479 >seq203 Length=1902415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||| | | |||||||| | |||||||| |||| || ||||||||||| || || Sbjct 1537031 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGT-CC 1537089 Query 116520 CAAG-TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578 |||| || | ||||||||| ||| |||||||||| || || || ||||| || || || | Sbjct 1537090 CAAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGC 1537149 Query 116579 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 | || || | || | || || | ||| | ||||| Sbjct 1537150 CGGTTTCGATCTGTGCCTCGATCACAGCGTACCATA 1537185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613246390420440