Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1072 93.3 7e-14 seq1038 93.3 7e-14 seq203 93.3 7e-14 >seq1072 Length=3228912 Score = 93.3 bits (102), Expect = 7e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | |||||| | ||||||| ||| || || || ||||| || Sbjct 2897210 CTTCCAGCCATAGAAATGCATGCTGGTCAGTTTGGCGTAGTTAGGCTCAGCTATGTGGAT 2897269 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| ||| |||||| ||||||||||||| || | || |||||||| |||| ||| | Sbjct 2897270 GTTGAGACTCTGGCTCTGGTCGATGAAAGCAGCTCTGTCGGCGGCCATCTTGACGATGTT 2897329 Query 204034 CTTCTGCGAAATCTCCCACACCGT 204057 ||| ||||| ||||||||||| || Sbjct 2897330 CTTTTGCGATATCTCCCACACGGT 2897353 >seq1038 Length=472731 Score = 93.3 bits (102), Expect = 7e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | |||||| || ||||||| ||| || || || ||||| || Sbjct 77596 CTTCCAGCCATAGAAATGCATGCTAGTCAGTTTGGCATAGTTAGGCTCAGCTATGTGGAT 77655 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| || |||||| |||||||| |||| || || || |||||||| |||| ||| | Sbjct 77656 GTTGAGGCTCTGGCTCTGGTCGATAAAAGCAGCTCGGTCGGCGGCCATCTTGACGATGTT 77715 Query 204034 CTTCTGCGAAATCTCCCACACCGT 204057 ||| ||||| ||||||||||| || Sbjct 77716 CTTTTGCGATATCTCCCACACAGT 77739 >seq203 Length=1902415 Score = 93.3 bits (102), Expect = 7e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | |||||| || ||||||| ||| || || || ||||| || Sbjct 1534302 CTTCCAGCCATAGAAATGCATGCTAGTCAGTTTGGCATAGTTAGGCTCAGCTATGTGGAT 1534361 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| || |||||| |||||||| |||| || || || |||||||| |||| ||| | Sbjct 1534362 GTTGAGGCTCTGGCTCTGGTCGATAAAAGCAGCTCGGTCGGCGGCCATCTTGACGATGTT 1534421 Query 204034 CTTCTGCGAAATCTCCCACACCGT 204057 ||| ||||| ||||||||||| || Sbjct 1534422 CTTTTGCGATATCTCCCACACAGT 1534445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794817169585040