Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1607 102 2e-16 seq498 102 2e-16 seq200 102 2e-16 >seq1607 Length=2233834 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1463826 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1463885 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| |||||||||||||| ||||| || ||| |||||| Sbjct 1463886 TCAAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1463936 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1462796 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1462855 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 || || || ||||| |||||||||||||| ||||| || ||| |||||||| Sbjct 1462856 TCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGAATTCCTT 1462907 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1461222 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1461281 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| ||||| || ||||||||||| ||||| |||||| |||||| Sbjct 1461282 TCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCCGGAGGGATTCCT 1461332 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1466244 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1466303 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| |||||||||||||| ||||| || ||| ||||||| Sbjct 1466304 TCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGAATTCCT 1466354 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| |||||||||| ||| || | |||||| Sbjct 1467906 AGGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCT 1467965 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| || || || ||||||||||| ||||| |||||| |||||| Sbjct 1467966 TCAAGCTGTTTACCAGCAAAGATGAGACGTTGCTGATCCGGAGGGATTCCT 1468016 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1464579 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1464638 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 1464639 TCAAGTTGTTTTCCAGCAAAGATGAGACGTTGCTGATCAGGAGGGATTCCT 1464689 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1466744 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1466803 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 1466804 TCAAGTTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1466854 >seq498 Length=2034514 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1868600 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1868541 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| |||||||||||||| ||||| |||||| ||||||| Sbjct 1868540 TCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGAGGAATTCCT 1868490 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1869048 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1868989 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 1868988 TCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1868938 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1869538 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1869479 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 1869478 TCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1869428 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1867197 AGTACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1867138 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| |||||||||||||| ||||| || ||| |||||| Sbjct 1867137 TCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1867087 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 1867927 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1867868 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 1867867 TCAAGTTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1867817 >seq200 Length=1515198 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 876039 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 876098 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| |||||||||||||| ||||| |||||| ||||||| Sbjct 876099 TCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGAGGAATTCCT 876149 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 875101 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 875160 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 875161 TCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 875211 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 875591 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 875650 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 875651 TCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 875701 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 876712 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 876771 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| || ||||||||||| ||||| || ||| |||||| Sbjct 876772 TCAAGTTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 876822 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||| || |||| ||||||||| ||| || | |||||| Sbjct 877442 AGTACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 877501 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || ||||| |||||||||||||| ||||| || ||| |||||| Sbjct 877502 TCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 877552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178407896333603