Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq938 96.9 4e-15 seq471 86.0 8e-12 seq427 86.0 8e-12 >seq938 Length=1152182 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 176888 GAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGA 176947 || ||||| ||||||||| | || ||||| || ||||| || || || | ||| ||| Sbjct 264183 GATGCATCTCGAACATTCAGAAGTTTACCACGCAGGGGGAACACCCCATATTTATCCCGA 264242 Query 176948 CCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATG 177007 || || || |||||||| | ||||| | ||||| |||||||| ||||| |||| ||| Sbjct 264243 CCCACAACCGAGAGACCTGATACCGCCAAAGTTTTGGCAGAATCCCCCTCGGTCAATATG 264302 Query 177008 AGTGTACACTTGCCA--GATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAA 177065 || || || | ||| || || || || || | ||||||||||||| || |||| Sbjct 264303 AGGGTGCAAT--CCATGGAATGCTTGGTGCCAGCATCATTCGCATCATCCAGCTTCGGAA 264360 Query 177066 TACC 177069 ||| Sbjct 264361 CACC 264364 >seq471 Length=1735002 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/185 (71%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 176888 GAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGT-AGTGATCGCG 176946 || ||||| ||||||||| | || ||||| || || || || || | | | ||| || Sbjct 730747 GATGCATCTCGAACATTCAGAAGTTTACCACGCAGGGGAAACACCCCATTATTTATCCCG 730806 Query 176947 ACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGAT 177006 ||| || || |||||||| | ||||| | ||||| |||||||| ||||| |||| || Sbjct 730807 ACCCACAACCGAGAGACCGGATACCGCCAATGTTTTGGCAGAATCCCCCTCGGTCAATAT 730866 Query 177007 GAGTGTACACTTGCCA--GATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGA 177064 ||| || || | ||| || || || || || | ||||||||||||| || ||| Sbjct 730867 GAGGGTGCAAT--CCATGGAATGCTTGGTGCCAGCATCATTCGCATCATCCAGCTTCGGA 730924 Query 177065 ATACC 177069 | ||| Sbjct 730925 ACACC 730929 >seq427 Length=1719641 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/185 (71%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 176888 GAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGT-AGTGATCGCG 176946 || ||||| ||||||||| | || ||||| || || || || || | | | ||| || Sbjct 713389 GATGCATCTCGAACATTCAGAAGTTTACCACGCAGGGGAAACACCCCATTATTTATCCCG 713448 Query 176947 ACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGAT 177006 ||| || || |||||||| | ||||| | ||||| |||||||| ||||| |||| || Sbjct 713449 ACCCACAACCGAGAGACCGGATACCGCCAATGTTTTGGCAGAATCCCCCTCGGTCAATAT 713508 Query 177007 GAGTGTACACTTGCCA--GATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGA 177064 ||| || || | ||| || || || || || | ||||||||||||| || ||| Sbjct 713509 GAGGGTGCAAT--CCATGGAATGCTTGGTGCCAGCATCATTCGCATCATCCAGCTTCGGA 713566 Query 177065 ATACC 177069 | ||| Sbjct 713567 ACACC 713571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620478514646480